Strain Fitness in Dechlorosoma suillum PS around Dsui_2043

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2042 and Dsui_2043 are separated by 173 nucleotidesDsui_2043 and Dsui_2044 are separated by 262 nucleotides Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945 _2042 Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624 _2043 Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660 _2044 Position (kb) 2162 2163 2164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2161.173 kb on - strand, within Dsui_2042at 2161.211 kb on + strand, within Dsui_2042at 2161.305 kb on - strand, within Dsui_2042at 2161.401 kb on + strandat 2161.565 kb on - strand, within Dsui_2042at 2161.610 kb on + strand, within Dsui_2042at 2161.610 kb on + strandat 2161.636 kb on - strand, within Dsui_2042at 2161.674 kb on - strandat 2161.705 kb on - strand, within Dsui_2042at 2161.771 kb on + strand, within Dsui_2042at 2161.798 kb on - strand, within Dsui_2042at 2161.881 kb on + strandat 2161.941 kb on + strandat 2161.941 kb on + strandat 2161.976 kb on + strandat 2161.994 kb on + strandat 2162.250 kb on - strandat 2162.782 kb on - strand, within Dsui_2043at 2162.862 kb on + strand, within Dsui_2043at 2163.094 kb on + strandat 2163.146 kb on - strand, within Dsui_2043at 2163.206 kb on - strandat 2163.228 kb on + strandat 2163.249 kb on + strandat 2163.253 kb on - strand, within Dsui_2043at 2163.305 kb on - strandat 2163.430 kb on - strand, within Dsui_2043at 2163.463 kb on - strand, within Dsui_2043at 2163.473 kb on - strand, within Dsui_2043at 2163.628 kb on + strandat 2163.628 kb on + strandat 2163.646 kb on + strandat 2163.647 kb on + strandat 2163.647 kb on + strandat 2163.647 kb on + strandat 2163.655 kb on - strandat 2163.845 kb on + strandat 2163.845 kb on + strandat 2163.853 kb on - strandat 2163.973 kb on + strand, within Dsui_2044at 2164.025 kb on - strand, within Dsui_2044at 2164.072 kb on - strandat 2164.075 kb on + strand, within Dsui_2044at 2164.089 kb on + strandat 2164.114 kb on - strandat 2164.174 kb on + strand, within Dsui_2044at 2164.259 kb on - strandat 2164.409 kb on + strand, within Dsui_2044

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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2,161,173 - Dsui_2042 0.34 -0.5
2,161,211 + Dsui_2042 0.38 -0.3
2,161,305 - Dsui_2042 0.46 -0.5
2,161,401 + +1.5
2,161,565 - Dsui_2042 0.68 -0.4
2,161,610 + Dsui_2042 0.72 +0.5
2,161,610 + +0.5
2,161,636 - Dsui_2042 0.74 +1.2
2,161,674 - +0.9
2,161,705 - Dsui_2042 0.80 -2.2
2,161,771 + Dsui_2042 0.85 +1.3
2,161,798 - Dsui_2042 0.87 -1.1
2,161,881 + +0.2
2,161,941 + +2.5
2,161,941 + +1.5
2,161,976 + -1.2
2,161,994 + +0.5
2,162,250 - +0.5
2,162,782 - Dsui_2043 0.44 +0.9
2,162,862 + Dsui_2043 0.49 +1.7
2,163,094 + +1.5
2,163,146 - Dsui_2043 0.68 +0.9
2,163,206 - -0.3
2,163,228 + +1.9
2,163,249 + +1.9
2,163,253 - Dsui_2043 0.75 +0.2
2,163,305 - +3.1
2,163,430 - Dsui_2043 0.87 -0.2
2,163,463 - Dsui_2043 0.89 -0.9
2,163,473 - Dsui_2043 0.90 +0.3
2,163,628 + -0.1
2,163,628 + +0.9
2,163,646 + +2.5
2,163,647 + +0.9
2,163,647 + +0.5
2,163,647 + +0.4
2,163,655 - +1.5
2,163,845 + +0.9
2,163,845 + +2.5
2,163,853 - +0.5
2,163,973 + Dsui_2044 0.11 +0.5
2,164,025 - Dsui_2044 0.18 +1.1
2,164,072 - +2.5
2,164,075 + Dsui_2044 0.24 -0.5
2,164,089 + +1.9
2,164,114 - +0.5
2,164,174 + Dsui_2044 0.37 +0.6
2,164,259 - +1.5
2,164,409 + Dsui_2044 0.67 +0.1

Or see this region's nucleotide sequence