Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1858 and Dsui_1859 are separated by 18 nucleotides Dsui_1859 and Dsui_1860 are separated by 13 nucleotides Dsui_1860 and Dsui_1861 are separated by 331 nucleotides Dsui_1861 and Dsui_1862 are separated by 15 nucleotides
Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140
_1858
Dsui_1859: Dsui_1859 - hypothetical protein, at 1,953,159 to 1,953,512
_1859
Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175
_1860
Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905
_1861
Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574
_1862
Position (kb)
1953
1954
1955
1956 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1952.729 kb on + strand, within Dsui_1858 at 1952.737 kb on - strand at 1952.784 kb on + strand, within Dsui_1858 at 1952.792 kb on - strand, within Dsui_1858 at 1952.825 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1952.938 kb on + strand, within Dsui_1858 at 1953.048 kb on - strand, within Dsui_1858 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.344 kb on + strand, within Dsui_1859 at 1953.352 kb on - strand, within Dsui_1859 at 1953.352 kb on - strand at 1953.352 kb on - strand at 1953.352 kb on - strand at 1953.357 kb on - strand at 1953.381 kb on - strand, within Dsui_1859 at 1953.436 kb on + strand, within Dsui_1859 at 1953.452 kb on - strand, within Dsui_1859 at 1953.507 kb on + strand at 1953.530 kb on + strand at 1953.538 kb on + strand at 1953.573 kb on + strand at 1953.573 kb on + strand at 1953.737 kb on - strand, within Dsui_1860 at 1953.737 kb on - strand, within Dsui_1860 at 1953.815 kb on + strand, within Dsui_1860 at 1953.849 kb on + strand at 1953.849 kb on + strand, within Dsui_1860 at 1953.849 kb on + strand, within Dsui_1860 at 1954.198 kb on + strand at 1954.386 kb on + strand at 1954.415 kb on - strand at 1954.427 kb on + strand, within Dsui_1860 at 1954.684 kb on + strand at 1954.859 kb on + strand at 1954.869 kb on + strand, within Dsui_1860 at 1955.022 kb on - strand at 1955.067 kb on + strand at 1955.075 kb on - strand at 1955.136 kb on + strand at 1955.167 kb on + strand at 1955.207 kb on - strand at 1955.288 kb on + strand at 1955.384 kb on - strand at 1955.580 kb on - strand, within Dsui_1861 at 1955.636 kb on - strand, within Dsui_1861 at 1955.659 kb on - strand, within Dsui_1861 at 1955.899 kb on + strand at 1955.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 1,952,729 + Dsui_1858 0.53 +1.0 1,952,737 - -0.3 1,952,784 + Dsui_1858 0.60 -0.6 1,952,792 - Dsui_1858 0.61 +1.2 1,952,825 + Dsui_1858 0.64 -1.5 1,952,938 + Dsui_1858 0.77 -0.3 1,952,938 + Dsui_1858 0.77 -0.9 1,953,048 - Dsui_1858 0.89 -2.0 1,953,344 + Dsui_1859 0.52 +0.6 1,953,344 + Dsui_1859 0.52 +0.4 1,953,344 + +0.9 1,953,344 + Dsui_1859 0.52 +0.8 1,953,344 + Dsui_1859 0.52 -0.9 1,953,344 + Dsui_1859 0.52 +0.9 1,953,352 - Dsui_1859 0.55 +0.2 1,953,352 - +1.5 1,953,352 - +2.5 1,953,352 - +1.2 1,953,357 - +1.9 1,953,381 - Dsui_1859 0.63 -0.3 1,953,436 + Dsui_1859 0.78 +0.4 1,953,452 - Dsui_1859 0.83 -1.3 1,953,507 + +2.1 1,953,530 + +0.1 1,953,538 + +0.4 1,953,573 + -0.3 1,953,573 + +0.6 1,953,737 - Dsui_1860 0.13 +0.3 1,953,737 - Dsui_1860 0.13 -1.1 1,953,815 + Dsui_1860 0.18 -0.3 1,953,849 + +1.9 1,953,849 + Dsui_1860 0.20 -1.3 1,953,849 + Dsui_1860 0.20 -0.3 1,954,198 + +1.5 1,954,386 + +2.5 1,954,415 - +1.5 1,954,427 + Dsui_1860 0.55 +0.1 1,954,684 + +1.9 1,954,859 + +0.5 1,954,869 + Dsui_1860 0.81 +0.6 1,955,022 - +0.9 1,955,067 + -0.6 1,955,075 - -0.8 1,955,136 + +0.9 1,955,167 + +2.5 1,955,207 - +2.1 1,955,288 + -0.4 1,955,384 - -0.3 1,955,580 - Dsui_1861 0.18 -2.0 1,955,636 - Dsui_1861 0.32 +0.7 1,955,659 - Dsui_1861 0.38 +0.5 1,955,899 + +0.6 1,955,985 - -0.2
Or see this region's nucleotide sequence