Strain Fitness in Dechlorosoma suillum PS around Dsui_1860

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1858 and Dsui_1859 are separated by 18 nucleotidesDsui_1859 and Dsui_1860 are separated by 13 nucleotidesDsui_1860 and Dsui_1861 are separated by 331 nucleotidesDsui_1861 and Dsui_1862 are separated by 15 nucleotides Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140 _1858 Dsui_1859: Dsui_1859 - hypothetical protein, at 1,953,159 to 1,953,512 _1859 Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175 _1860 Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905 _1861 Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574 _1862 Position (kb) 1953 1954 1955 1956Strain fitness (log2 ratio) -2 -1 0 1 2at 1952.729 kb on + strand, within Dsui_1858at 1952.737 kb on - strandat 1952.784 kb on + strand, within Dsui_1858at 1952.792 kb on - strand, within Dsui_1858at 1952.825 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1953.048 kb on - strand, within Dsui_1858at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strandat 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.352 kb on - strand, within Dsui_1859at 1953.352 kb on - strandat 1953.352 kb on - strandat 1953.352 kb on - strandat 1953.357 kb on - strandat 1953.381 kb on - strand, within Dsui_1859at 1953.436 kb on + strand, within Dsui_1859at 1953.452 kb on - strand, within Dsui_1859at 1953.507 kb on + strandat 1953.530 kb on + strandat 1953.538 kb on + strandat 1953.573 kb on + strandat 1953.573 kb on + strandat 1953.737 kb on - strand, within Dsui_1860at 1953.737 kb on - strand, within Dsui_1860at 1953.815 kb on + strand, within Dsui_1860at 1953.849 kb on + strandat 1953.849 kb on + strand, within Dsui_1860at 1953.849 kb on + strand, within Dsui_1860at 1954.198 kb on + strandat 1954.386 kb on + strandat 1954.415 kb on - strandat 1954.427 kb on + strand, within Dsui_1860at 1954.684 kb on + strandat 1954.859 kb on + strandat 1954.869 kb on + strand, within Dsui_1860at 1955.022 kb on - strandat 1955.067 kb on + strandat 1955.075 kb on - strandat 1955.136 kb on + strandat 1955.167 kb on + strandat 1955.207 kb on - strandat 1955.288 kb on + strandat 1955.384 kb on - strandat 1955.580 kb on - strand, within Dsui_1861at 1955.636 kb on - strand, within Dsui_1861at 1955.659 kb on - strand, within Dsui_1861at 1955.899 kb on + strandat 1955.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,952,729 + Dsui_1858 0.53 +1.0
1,952,737 - -0.3
1,952,784 + Dsui_1858 0.60 -0.6
1,952,792 - Dsui_1858 0.61 +1.2
1,952,825 + Dsui_1858 0.64 -1.5
1,952,938 + Dsui_1858 0.77 -0.3
1,952,938 + Dsui_1858 0.77 -0.9
1,953,048 - Dsui_1858 0.89 -2.0
1,953,344 + Dsui_1859 0.52 +0.6
1,953,344 + Dsui_1859 0.52 +0.4
1,953,344 + +0.9
1,953,344 + Dsui_1859 0.52 +0.8
1,953,344 + Dsui_1859 0.52 -0.9
1,953,344 + Dsui_1859 0.52 +0.9
1,953,352 - Dsui_1859 0.55 +0.2
1,953,352 - +1.5
1,953,352 - +2.5
1,953,352 - +1.2
1,953,357 - +1.9
1,953,381 - Dsui_1859 0.63 -0.3
1,953,436 + Dsui_1859 0.78 +0.4
1,953,452 - Dsui_1859 0.83 -1.3
1,953,507 + +2.1
1,953,530 + +0.1
1,953,538 + +0.4
1,953,573 + -0.3
1,953,573 + +0.6
1,953,737 - Dsui_1860 0.13 +0.3
1,953,737 - Dsui_1860 0.13 -1.1
1,953,815 + Dsui_1860 0.18 -0.3
1,953,849 + +1.9
1,953,849 + Dsui_1860 0.20 -1.3
1,953,849 + Dsui_1860 0.20 -0.3
1,954,198 + +1.5
1,954,386 + +2.5
1,954,415 - +1.5
1,954,427 + Dsui_1860 0.55 +0.1
1,954,684 + +1.9
1,954,859 + +0.5
1,954,869 + Dsui_1860 0.81 +0.6
1,955,022 - +0.9
1,955,067 + -0.6
1,955,075 - -0.8
1,955,136 + +0.9
1,955,167 + +2.5
1,955,207 - +2.1
1,955,288 + -0.4
1,955,384 - -0.3
1,955,580 - Dsui_1861 0.18 -2.0
1,955,636 - Dsui_1861 0.32 +0.7
1,955,659 - Dsui_1861 0.38 +0.5
1,955,899 + +0.6
1,955,985 - -0.2

Or see this region's nucleotide sequence