Strain Fitness in Dechlorosoma suillum PS around Dsui_1427

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1426 and Dsui_1427 are separated by 20 nucleotidesDsui_1427 and Dsui_1428 are separated by 19 nucleotidesDsui_1428 and Dsui_1429 are separated by 154 nucleotides Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414 _1426 Dsui_1427: Dsui_1427 - dinuclear metal center protein, YbgI/SA1388 family, at 1,479,435 to 1,480,181 _1427 Dsui_1428: Dsui_1428 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 1,480,201 to 1,480,917 _1428 Dsui_1429: Dsui_1429 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,481,072 to 1,484,548 _1429 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -2 -1 0 1 2at 1478.517 kb on + strand, within Dsui_1426at 1478.747 kb on + strand, within Dsui_1426at 1478.801 kb on - strand, within Dsui_1426at 1478.846 kb on + strandat 1478.938 kb on - strand, within Dsui_1426at 1479.096 kb on + strand, within Dsui_1426at 1479.096 kb on + strand, within Dsui_1426at 1479.104 kb on - strand, within Dsui_1426at 1479.214 kb on - strand, within Dsui_1426at 1479.215 kb on + strand, within Dsui_1426at 1479.335 kb on + strandat 1479.344 kb on - strandat 1479.368 kb on + strandat 1479.375 kb on + strandat 1479.473 kb on + strandat 1479.575 kb on - strandat 1479.685 kb on - strandat 1479.685 kb on - strand, within Dsui_1427at 1479.696 kb on - strand, within Dsui_1427at 1479.696 kb on - strandat 1479.700 kb on - strand, within Dsui_1427at 1479.710 kb on + strand, within Dsui_1427at 1479.784 kb on - strandat 1479.965 kb on + strand, within Dsui_1427at 1479.990 kb on - strand, within Dsui_1427at 1480.046 kb on - strandat 1480.183 kb on - strandat 1480.234 kb on + strandat 1480.270 kb on - strandat 1480.427 kb on + strand, within Dsui_1428at 1480.453 kb on - strand, within Dsui_1428at 1480.524 kb on + strand, within Dsui_1428at 1480.530 kb on - strand, within Dsui_1428at 1480.546 kb on + strand, within Dsui_1428at 1480.625 kb on - strand, within Dsui_1428at 1480.632 kb on - strand, within Dsui_1428at 1480.633 kb on - strand, within Dsui_1428at 1480.635 kb on + strand, within Dsui_1428at 1480.852 kb on - strandat 1480.960 kb on + strandat 1481.026 kb on + strandat 1481.093 kb on + strandat 1481.129 kb on + strandat 1481.129 kb on + strandat 1481.134 kb on + strandat 1481.134 kb on + strandat 1481.142 kb on - strandat 1481.147 kb on - strandat 1481.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,478,517 + Dsui_1426 0.22 +1.3
1,478,747 + Dsui_1426 0.42 +0.0
1,478,801 - Dsui_1426 0.47 +2.5
1,478,846 + +1.5
1,478,938 - Dsui_1426 0.59 -1.3
1,479,096 + Dsui_1426 0.72 -1.9
1,479,096 + Dsui_1426 0.72 +0.3
1,479,104 - Dsui_1426 0.73 -0.7
1,479,214 - Dsui_1426 0.83 -0.1
1,479,215 + Dsui_1426 0.83 -0.1
1,479,335 + -0.3
1,479,344 - -0.1
1,479,368 + +0.0
1,479,375 + -0.7
1,479,473 + +0.9
1,479,575 - +1.5
1,479,685 - +1.5
1,479,685 - Dsui_1427 0.33 +1.5
1,479,696 - Dsui_1427 0.35 +0.2
1,479,696 - +1.5
1,479,700 - Dsui_1427 0.35 +1.7
1,479,710 + Dsui_1427 0.37 -0.3
1,479,784 - +0.5
1,479,965 + Dsui_1427 0.71 +0.6
1,479,990 - Dsui_1427 0.74 +0.4
1,480,046 - +2.5
1,480,183 - +0.2
1,480,234 + -0.2
1,480,270 - -0.3
1,480,427 + Dsui_1428 0.32 +0.4
1,480,453 - Dsui_1428 0.35 +1.1
1,480,524 + Dsui_1428 0.45 +0.6
1,480,530 - Dsui_1428 0.46 -0.3
1,480,546 + Dsui_1428 0.48 -0.7
1,480,625 - Dsui_1428 0.59 -0.6
1,480,632 - Dsui_1428 0.60 +0.5
1,480,633 - Dsui_1428 0.60 -0.5
1,480,635 + Dsui_1428 0.61 -0.5
1,480,852 - +0.5
1,480,960 + -0.6
1,481,026 + -1.3
1,481,093 + -1.7
1,481,129 + -0.2
1,481,129 + -0.8
1,481,134 + +0.2
1,481,134 + +0.3
1,481,142 - -0.2
1,481,147 - +0.1
1,481,164 + -2.3

Or see this region's nucleotide sequence