Strain Fitness in Dechlorosoma suillum PS around Dsui_1393

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1392 and Dsui_1393 are separated by 9 nucleotidesDsui_1393 and Dsui_1394 overlap by 4 nucleotides Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844 _1392 Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560 _1393 Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534 _1394 Position (kb) 1450 1451 1452 1453Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1449.906 kb on + strand, within Dsui_1392at 1449.975 kb on - strandat 1450.036 kb on - strand, within Dsui_1392at 1450.236 kb on + strand, within Dsui_1392at 1450.244 kb on - strand, within Dsui_1392at 1450.292 kb on + strand, within Dsui_1392at 1450.328 kb on - strand, within Dsui_1392at 1450.457 kb on + strand, within Dsui_1392at 1450.476 kb on - strand, within Dsui_1392at 1450.479 kb on + strand, within Dsui_1392at 1450.541 kb on + strandat 1450.545 kb on - strandat 1450.697 kb on + strandat 1450.719 kb on + strandat 1450.720 kb on + strand, within Dsui_1392at 1450.727 kb on - strandat 1450.853 kb on - strandat 1450.857 kb on + strandat 1450.872 kb on + strandat 1450.901 kb on + strandat 1450.909 kb on - strandat 1450.988 kb on - strandat 1451.348 kb on + strandat 1451.399 kb on - strandat 1451.639 kb on + strandat 1451.639 kb on + strand, within Dsui_1393at 1451.639 kb on + strandat 1451.647 kb on - strandat 1451.656 kb on + strandat 1451.668 kb on + strand, within Dsui_1393at 1451.668 kb on - strand, within Dsui_1393at 1451.932 kb on + strand, within Dsui_1393at 1452.105 kb on - strandat 1452.112 kb on - strand, within Dsui_1393at 1452.278 kb on - strandat 1452.462 kb on - strandat 1452.661 kb on - strand, within Dsui_1394at 1452.784 kb on - strand, within Dsui_1394at 1452.797 kb on + strand, within Dsui_1394at 1452.830 kb on - strand, within Dsui_1394at 1452.892 kb on - strand, within Dsui_1394at 1453.053 kb on - strandat 1453.103 kb on - strand, within Dsui_1394at 1453.431 kb on - strand, within Dsui_1394at 1453.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,449,906 + Dsui_1392 0.22 -0.1
1,449,975 - +0.9
1,450,036 - Dsui_1392 0.33 -0.6
1,450,236 + Dsui_1392 0.49 -0.1
1,450,244 - Dsui_1392 0.50 -2.2
1,450,292 + Dsui_1392 0.54 -2.1
1,450,328 - Dsui_1392 0.57 +1.3
1,450,457 + Dsui_1392 0.68 +0.4
1,450,476 - Dsui_1392 0.69 -0.3
1,450,479 + Dsui_1392 0.69 +0.8
1,450,541 + +0.5
1,450,545 - +2.5
1,450,697 + +1.5
1,450,719 + +0.9
1,450,720 + Dsui_1392 0.90 -1.1
1,450,727 - -1.8
1,450,853 - +3.5
1,450,857 + -0.1
1,450,872 + +1.9
1,450,901 + -0.5
1,450,909 - -2.2
1,450,988 - +0.0
1,451,348 + +2.5
1,451,399 - +0.5
1,451,639 + +0.9
1,451,639 + Dsui_1393 0.46 +0.1
1,451,639 + -0.1
1,451,647 - +0.5
1,451,656 + +1.2
1,451,668 + Dsui_1393 0.48 -0.6
1,451,668 - Dsui_1393 0.48 -2.2
1,451,932 + Dsui_1393 0.63 +0.0
1,452,105 - +0.5
1,452,112 - Dsui_1393 0.74 -0.9
1,452,278 - +1.5
1,452,462 - +0.6
1,452,661 - Dsui_1394 0.11 -0.8
1,452,784 - Dsui_1394 0.23 +0.1
1,452,797 + Dsui_1394 0.25 +0.6
1,452,830 - Dsui_1394 0.28 +0.1
1,452,892 - Dsui_1394 0.34 +0.1
1,453,053 - +0.9
1,453,103 - Dsui_1394 0.56 +0.5
1,453,431 - Dsui_1394 0.89 -0.6
1,453,468 - -0.1

Or see this region's nucleotide sequence