Strain Fitness in Dechlorosoma suillum PS around Dsui_1118

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1116 and Dsui_1117 are separated by 78 nucleotidesDsui_1117 and Dsui_1118 are separated by 123 nucleotidesDsui_1118 and Dsui_1119 are separated by 47 nucleotidesDsui_1119 and Dsui_1120 overlap by 4 nucleotides Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431 _1116 Dsui_1117: Dsui_1117 - hemerythrin-like metal-binding domain-containing protein, at 1,165,510 to 1,165,926 _1117 Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946 _1118 Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482 _1119 Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063 _1120 Position (kb) 1166 1167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1165.137 kb on + strand, within Dsui_1116at 1165.188 kb on + strand, within Dsui_1116at 1165.275 kb on + strandat 1165.709 kb on + strand, within Dsui_1117at 1165.736 kb on + strandat 1165.817 kb on - strand, within Dsui_1117at 1165.817 kb on - strand, within Dsui_1117at 1165.969 kb on - strandat 1166.010 kb on + strandat 1166.018 kb on - strandat 1166.062 kb on + strandat 1166.183 kb on - strand, within Dsui_1118at 1166.193 kb on - strand, within Dsui_1118at 1166.212 kb on + strand, within Dsui_1118at 1166.261 kb on + strand, within Dsui_1118at 1166.278 kb on + strand, within Dsui_1118at 1166.286 kb on - strand, within Dsui_1118at 1166.345 kb on - strand, within Dsui_1118at 1166.524 kb on + strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.543 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.840 kb on - strand, within Dsui_1118at 1166.977 kb on + strandat 1167.168 kb on + strand, within Dsui_1119at 1167.325 kb on + strand, within Dsui_1119at 1167.327 kb on - strand, within Dsui_1119at 1167.408 kb on - strand, within Dsui_1119at 1167.493 kb on + strandat 1167.508 kb on + strandat 1167.731 kb on + strand, within Dsui_1120at 1167.732 kb on + strand, within Dsui_1120at 1167.795 kb on + strand, within Dsui_1120at 1167.855 kb on - strand, within Dsui_1120at 1167.931 kb on + strand, within Dsui_1120at 1167.939 kb on - strand, within Dsui_1120

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,165,137 + Dsui_1116 0.82 -0.3
1,165,188 + Dsui_1116 0.85 +0.0
1,165,275 + +1.2
1,165,709 + Dsui_1117 0.48 +0.0
1,165,736 + +0.3
1,165,817 - Dsui_1117 0.74 +0.1
1,165,817 - Dsui_1117 0.74 -0.7
1,165,969 - -0.4
1,166,010 + -0.6
1,166,018 - +0.1
1,166,062 + -0.7
1,166,183 - Dsui_1118 0.15 +0.2
1,166,193 - Dsui_1118 0.16 +0.0
1,166,212 + Dsui_1118 0.18 -0.4
1,166,261 + Dsui_1118 0.24 -0.3
1,166,278 + Dsui_1118 0.25 -0.3
1,166,286 - Dsui_1118 0.26 -0.5
1,166,345 - Dsui_1118 0.33 -0.4
1,166,524 + Dsui_1118 0.53 -4.1
1,166,532 - Dsui_1118 0.54 +1.1
1,166,532 - Dsui_1118 0.54 -0.4
1,166,532 - Dsui_1118 0.54 -1.4
1,166,543 + Dsui_1118 0.55 -0.2
1,166,832 + Dsui_1118 0.87 -0.4
1,166,832 + Dsui_1118 0.87 -0.2
1,166,840 - Dsui_1118 0.88 -0.4
1,166,977 + -0.7
1,167,168 + Dsui_1119 0.36 -0.7
1,167,325 + Dsui_1119 0.68 +0.1
1,167,327 - Dsui_1119 0.68 +0.6
1,167,408 - Dsui_1119 0.85 -2.1
1,167,493 + +0.3
1,167,508 + +0.9
1,167,731 + Dsui_1120 0.43 -0.5
1,167,732 + Dsui_1120 0.43 -0.3
1,167,795 + Dsui_1120 0.54 +0.1
1,167,855 - Dsui_1120 0.64 -0.4
1,167,931 + Dsui_1120 0.77 -0.7
1,167,939 - Dsui_1120 0.79 -1.9

Or see this region's nucleotide sequence