Strain Fitness in Dechlorosoma suillum PS around Dsui_0880

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0878 and Dsui_0879 are separated by 14 nucleotidesDsui_0879 and Dsui_0880 are separated by 157 nucleotidesDsui_0880 and Dsui_0881 are separated by 21 nucleotidesDsui_0881 and Dsui_0882 are separated by 189 nucleotides Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821 _0878 Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144 _0879 Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619 _0880 Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348 _0881 Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835 _0882 Position (kb) 892 893Strain fitness (log2 ratio) -2 -1 0 1 2 3at 891.322 kb on + strand, within Dsui_0878at 891.332 kb on + strand, within Dsui_0878at 891.332 kb on + strand, within Dsui_0878at 891.340 kb on - strand, within Dsui_0878at 891.377 kb on - strandat 891.388 kb on + strand, within Dsui_0878at 891.396 kb on - strand, within Dsui_0878at 891.396 kb on - strand, within Dsui_0878at 891.574 kb on + strand, within Dsui_0878at 891.582 kb on - strandat 891.588 kb on - strand, within Dsui_0878at 891.593 kb on - strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.628 kb on + strand, within Dsui_0878at 891.628 kb on + strand, within Dsui_0878at 891.632 kb on - strand, within Dsui_0878at 891.632 kb on - strandat 891.632 kb on - strand, within Dsui_0878at 891.653 kb on + strand, within Dsui_0878at 891.661 kb on + strand, within Dsui_0878at 891.662 kb on - strand, within Dsui_0878at 891.769 kb on + strandat 891.787 kb on - strandat 891.803 kb on + strandat 891.806 kb on - strandat 891.815 kb on + strandat 891.816 kb on + strandat 891.818 kb on - strandat 891.847 kb on + strandat 891.905 kb on + strand, within Dsui_0879at 891.913 kb on - strandat 891.923 kb on - strandat 891.988 kb on + strand, within Dsui_0879at 892.073 kb on + strand, within Dsui_0879at 892.145 kb on - strandat 892.260 kb on + strandat 892.265 kb on + strandat 892.273 kb on - strandat 892.278 kb on + strandat 892.278 kb on + strandat 892.328 kb on + strandat 892.330 kb on - strandat 892.336 kb on - strandat 892.341 kb on - strand, within Dsui_0880at 892.403 kb on - strand, within Dsui_0880at 892.467 kb on + strand, within Dsui_0880at 892.481 kb on + strand, within Dsui_0880at 892.497 kb on + strand, within Dsui_0880at 892.497 kb on - strand, within Dsui_0880at 892.523 kb on + strandat 892.575 kb on - strand, within Dsui_0880at 892.590 kb on + strandat 892.686 kb on - strandat 892.693 kb on + strandat 892.719 kb on + strand, within Dsui_0881at 892.743 kb on + strand, within Dsui_0881at 892.751 kb on - strand, within Dsui_0881at 892.758 kb on + strand, within Dsui_0881at 892.771 kb on - strandat 892.787 kb on - strand, within Dsui_0881at 892.821 kb on - strand, within Dsui_0881at 892.876 kb on - strand, within Dsui_0881at 892.900 kb on - strand, within Dsui_0881at 892.921 kb on + strand, within Dsui_0881at 892.929 kb on + strand, within Dsui_0881at 893.065 kb on - strand, within Dsui_0881at 893.147 kb on + strand, within Dsui_0881at 893.155 kb on - strand, within Dsui_0881at 893.171 kb on + strand, within Dsui_0881at 893.227 kb on + strand, within Dsui_0881at 893.252 kb on + strand, within Dsui_0881at 893.260 kb on - strand, within Dsui_0881at 893.284 kb on - strandat 893.291 kb on - strandat 893.323 kb on + strandat 893.331 kb on - strandat 893.342 kb on + strandat 893.343 kb on + strandat 893.350 kb on - strandat 893.351 kb on - strandat 893.351 kb on - strandat 893.395 kb on - strandat 893.486 kb on + strandat 893.526 kb on + strandat 893.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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891,322 + Dsui_0878 0.21 +2.0
891,332 + Dsui_0878 0.23 +0.8
891,332 + Dsui_0878 0.23 +0.8
891,340 - Dsui_0878 0.24 -0.4
891,377 - +2.6
891,388 + Dsui_0878 0.32 +0.6
891,396 - Dsui_0878 0.33 +0.1
891,396 - Dsui_0878 0.33 -0.1
891,574 + Dsui_0878 0.61 -0.3
891,582 - +1.6
891,588 - Dsui_0878 0.63 -0.4
891,593 - Dsui_0878 0.64 -0.5
891,624 + Dsui_0878 0.69 +0.3
891,624 + Dsui_0878 0.69 +0.1
891,624 + Dsui_0878 0.69 +1.9
891,624 + Dsui_0878 0.69 +0.2
891,628 + Dsui_0878 0.69 -0.1
891,628 + Dsui_0878 0.69 +0.8
891,632 - Dsui_0878 0.70 -0.5
891,632 - +2.6
891,632 - Dsui_0878 0.70 +1.3
891,653 + Dsui_0878 0.73 -0.1
891,661 + Dsui_0878 0.75 -0.1
891,662 - Dsui_0878 0.75 -0.2
891,769 + -0.3
891,787 - +0.2
891,803 + +0.4
891,806 - +2.1
891,815 + -0.9
891,816 + -0.4
891,818 - +3.6
891,847 + -0.2
891,905 + Dsui_0879 0.22 -0.0
891,913 - +1.1
891,923 - +1.6
891,988 + Dsui_0879 0.49 +0.3
892,073 + Dsui_0879 0.77 -1.1
892,145 - +0.6
892,260 + -0.4
892,265 + -0.5
892,273 - +0.5
892,278 + +0.6
892,278 + +0.3
892,328 + -0.2
892,330 - +0.3
892,336 - +2.2
892,341 - Dsui_0880 0.12 +0.5
892,403 - Dsui_0880 0.32 -0.5
892,467 + Dsui_0880 0.52 +0.1
892,481 + Dsui_0880 0.56 -0.5
892,497 + Dsui_0880 0.61 -0.7
892,497 - Dsui_0880 0.61 -1.8
892,523 + +0.8
892,575 - Dsui_0880 0.86 -1.4
892,590 + +1.1
892,686 - +1.8
892,693 + -0.2
892,719 + Dsui_0881 0.11 -0.0
892,743 + Dsui_0881 0.14 -1.7
892,751 - Dsui_0881 0.16 +0.1
892,758 + Dsui_0881 0.17 -0.8
892,771 - +1.6
892,787 - Dsui_0881 0.21 -0.3
892,821 - Dsui_0881 0.25 -0.2
892,876 - Dsui_0881 0.33 +0.7
892,900 - Dsui_0881 0.37 +0.3
892,921 + Dsui_0881 0.40 +0.3
892,929 + Dsui_0881 0.41 +0.2
893,065 - Dsui_0881 0.60 -0.4
893,147 + Dsui_0881 0.71 +0.7
893,155 - Dsui_0881 0.73 +1.6
893,171 + Dsui_0881 0.75 +0.1
893,227 + Dsui_0881 0.83 +0.8
893,252 + Dsui_0881 0.86 +0.0
893,260 - Dsui_0881 0.87 -1.3
893,284 - +0.1
893,291 - +2.2
893,323 + -0.0
893,331 - +1.1
893,342 + +0.1
893,343 + -1.8
893,350 - +2.6
893,351 - +3.6
893,351 - +0.3
893,395 - +1.2
893,486 + +0.6
893,526 + -1.6
893,580 - -0.6

Or see this region's nucleotide sequence