Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0568 and Dsui_0569 are separated by 81 nucleotides Dsui_0569 and Dsui_0570 are separated by 19 nucleotides Dsui_0570 and Dsui_0571 overlap by 10 nucleotides Dsui_0571 and Dsui_0572 are separated by 9 nucleotides
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Dsui_0569: Dsui_0569 - hypothetical protein, at 569,562 to 570,041
_0569
Dsui_0570: Dsui_0570 - hypothetical protein, at 570,061 to 570,555
_0570
Dsui_0571: Dsui_0571 - ferredoxin, at 570,546 to 570,869
_0571
Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334
_0572
Position (kb) 570
571 Strain fitness (log2 ratio) -1
0
1
2 at 569.110 kb on - strand, within Dsui_0568 at 569.138 kb on - strand, within Dsui_0568 at 569.183 kb on + strand, within Dsui_0568 at 569.191 kb on - strand, within Dsui_0568 at 569.271 kb on - strand at 569.366 kb on - strand at 569.449 kb on - strand at 569.449 kb on - strand at 569.514 kb on + strand at 569.514 kb on + strand at 569.517 kb on - strand at 569.734 kb on - strand, within Dsui_0569 at 569.783 kb on - strand, within Dsui_0569 at 569.827 kb on - strand, within Dsui_0569 at 569.858 kb on + strand at 569.980 kb on - strand, within Dsui_0569 at 569.998 kb on - strand at 570.201 kb on - strand, within Dsui_0570 at 570.250 kb on + strand at 570.393 kb on - strand, within Dsui_0570 at 570.656 kb on - strand, within Dsui_0571 at 570.698 kb on + strand, within Dsui_0571 at 571.022 kb on - strand, within Dsui_0572 at 571.041 kb on - strand, within Dsui_0572 at 571.138 kb on - strand, within Dsui_0572 at 571.171 kb on + strand, within Dsui_0572 at 571.194 kb on + strand, within Dsui_0572 at 571.251 kb on - strand, within Dsui_0572 at 571.297 kb on - strand at 571.317 kb on - strand at 571.406 kb on + strand at 571.416 kb on - strand at 571.458 kb on + strand at 571.534 kb on + strand at 571.534 kb on - strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 569,110 - Dsui_0568 0.81 -0.8 569,138 - Dsui_0568 0.82 +1.2 569,183 + Dsui_0568 0.84 +0.1 569,191 - Dsui_0568 0.85 +0.4 569,271 - +0.5 569,366 - +1.5 569,449 - -0.4 569,449 - -0.4 569,514 + +0.4 569,514 + +1.5 569,517 - -1.1 569,734 - Dsui_0569 0.36 -0.8 569,783 - Dsui_0569 0.46 -0.9 569,827 - Dsui_0569 0.55 -0.9 569,858 + +2.5 569,980 - Dsui_0569 0.87 +0.4 569,998 - +2.5 570,201 - Dsui_0570 0.28 +1.9 570,250 + +1.5 570,393 - Dsui_0570 0.67 +0.4 570,656 - Dsui_0571 0.34 -0.7 570,698 + Dsui_0571 0.47 -0.5 571,022 - Dsui_0572 0.31 +0.3 571,041 - Dsui_0572 0.36 -0.0 571,138 - Dsui_0572 0.57 +0.5 571,171 + Dsui_0572 0.64 -1.5 571,194 + Dsui_0572 0.69 +0.1 571,251 - Dsui_0572 0.82 -0.0 571,297 - -0.1 571,317 - -0.2 571,406 + +0.5 571,416 - -0.1 571,458 + +0.5 571,534 + +0.5 571,534 - -0.5 571,535 + -0.5 571,535 + +0.5 571,535 + -0.2 571,535 + -0.5 571,543 - -0.3 571,543 - +0.2
Or see this region's nucleotide sequence