Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0566 and Dsui_0567 overlap by 4 nucleotides Dsui_0567 and Dsui_0568 are separated by 168 nucleotides Dsui_0568 and Dsui_0569 are separated by 81 nucleotides Dsui_0569 and Dsui_0570 are separated by 19 nucleotides
Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568
_0566
Dsui_0567: Dsui_0567 - molybdenum-pterin binding domain protein, at 566,565 to 567,395
_0567
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Dsui_0569: Dsui_0569 - hypothetical protein, at 569,562 to 570,041
_0569
Dsui_0570: Dsui_0570 - hypothetical protein, at 570,061 to 570,555
_0570
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -2
-1
0
1
2 at 566.792 kb on - strand, within Dsui_0567 at 566.851 kb on - strand at 566.913 kb on - strand, within Dsui_0567 at 566.987 kb on + strand at 567.157 kb on + strand at 567.275 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.390 kb on - strand at 567.440 kb on + strand at 567.453 kb on - strand at 567.695 kb on + strand at 567.840 kb on - strand, within Dsui_0568 at 567.880 kb on + strand, within Dsui_0568 at 567.948 kb on - strand at 567.979 kb on - strand, within Dsui_0568 at 568.225 kb on - strand, within Dsui_0568 at 568.313 kb on + strand, within Dsui_0568 at 568.313 kb on + strand at 568.321 kb on - strand, within Dsui_0568 at 568.359 kb on - strand, within Dsui_0568 at 568.433 kb on + strand at 568.439 kb on - strand, within Dsui_0568 at 568.567 kb on + strand, within Dsui_0568 at 568.695 kb on - strand, within Dsui_0568 at 569.020 kb on - strand at 569.110 kb on - strand, within Dsui_0568 at 569.138 kb on - strand, within Dsui_0568 at 569.183 kb on + strand, within Dsui_0568 at 569.191 kb on - strand, within Dsui_0568 at 569.271 kb on - strand at 569.366 kb on - strand at 569.449 kb on - strand at 569.449 kb on - strand at 569.514 kb on + strand at 569.514 kb on + strand at 569.517 kb on - strand at 569.734 kb on - strand, within Dsui_0569 at 569.783 kb on - strand, within Dsui_0569 at 569.827 kb on - strand, within Dsui_0569 at 569.858 kb on + strand at 569.980 kb on - strand, within Dsui_0569 at 569.998 kb on - strand at 570.201 kb on - strand, within Dsui_0570 at 570.250 kb on + strand at 570.393 kb on - strand, within Dsui_0570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 566,792 - Dsui_0567 0.27 -1.9 566,851 - +1.5 566,913 - Dsui_0567 0.42 -1.3 566,987 + +1.5 567,157 + +1.3 567,275 - +2.5 567,360 - +0.9 567,360 - +1.5 567,360 - -1.1 567,360 - -0.7 567,390 - -1.4 567,440 + +2.5 567,453 - +1.5 567,695 + +0.1 567,840 - Dsui_0568 0.14 +0.2 567,880 + Dsui_0568 0.16 -1.2 567,948 - +1.5 567,979 - Dsui_0568 0.22 +1.5 568,225 - Dsui_0568 0.34 +0.5 568,313 + Dsui_0568 0.39 +1.1 568,313 + +1.5 568,321 - Dsui_0568 0.39 -1.4 568,359 - Dsui_0568 0.41 -0.7 568,433 + -0.1 568,439 - Dsui_0568 0.46 -0.2 568,567 + Dsui_0568 0.52 +0.2 568,695 - Dsui_0568 0.59 -0.1 569,020 - +1.2 569,110 - Dsui_0568 0.81 -0.8 569,138 - Dsui_0568 0.82 +1.2 569,183 + Dsui_0568 0.84 +0.1 569,191 - Dsui_0568 0.85 +0.4 569,271 - +0.5 569,366 - +1.5 569,449 - -0.4 569,449 - -0.4 569,514 + +0.4 569,514 + +1.5 569,517 - -1.1 569,734 - Dsui_0569 0.36 -0.8 569,783 - Dsui_0569 0.46 -0.9 569,827 - Dsui_0569 0.55 -0.9 569,858 + +2.5 569,980 - Dsui_0569 0.87 +0.4 569,998 - +2.5 570,201 - Dsui_0570 0.28 +1.9 570,250 + +1.5 570,393 - Dsui_0570 0.67 +0.4
Or see this region's nucleotide sequence