Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0565 and Dsui_0566 are separated by 38 nucleotides Dsui_0566 and Dsui_0567 overlap by 4 nucleotides Dsui_0567 and Dsui_0568 are separated by 168 nucleotides
Dsui_0565: Dsui_0565 - hypothetical protein, at 565,253 to 565,639
_0565
Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568
_0566
Dsui_0567: Dsui_0567 - molybdenum-pterin binding domain protein, at 566,565 to 567,395
_0567
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Position (kb) 566
567
568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.573 kb on - strand, within Dsui_0565 at 565.587 kb on + strand at 565.984 kb on + strand at 565.992 kb on - strand, within Dsui_0566 at 566.194 kb on - strand, within Dsui_0566 at 566.276 kb on - strand at 566.332 kb on + strand at 566.340 kb on - strand, within Dsui_0566 at 566.562 kb on + strand at 566.792 kb on - strand, within Dsui_0567 at 566.851 kb on - strand at 566.913 kb on - strand, within Dsui_0567 at 566.987 kb on + strand at 567.157 kb on + strand at 567.275 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.390 kb on - strand at 567.440 kb on + strand at 567.453 kb on - strand at 567.695 kb on + strand at 567.840 kb on - strand, within Dsui_0568 at 567.880 kb on + strand, within Dsui_0568 at 567.948 kb on - strand at 567.979 kb on - strand, within Dsui_0568 at 568.225 kb on - strand, within Dsui_0568 at 568.313 kb on + strand, within Dsui_0568 at 568.313 kb on + strand at 568.321 kb on - strand, within Dsui_0568 at 568.359 kb on - strand, within Dsui_0568
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 565,573 - Dsui_0565 0.83 -0.5 565,587 + +2.5 565,984 + +0.5 565,992 - Dsui_0566 0.35 -0.6 566,194 - Dsui_0566 0.58 -1.7 566,276 - +1.5 566,332 + -0.5 566,340 - Dsui_0566 0.74 +0.4 566,562 + +0.3 566,792 - Dsui_0567 0.27 -1.9 566,851 - +1.5 566,913 - Dsui_0567 0.42 -1.3 566,987 + +1.5 567,157 + +1.3 567,275 - +2.5 567,360 - +0.9 567,360 - +1.5 567,360 - -1.1 567,360 - -0.7 567,390 - -1.4 567,440 + +2.5 567,453 - +1.5 567,695 + +0.1 567,840 - Dsui_0568 0.14 +0.2 567,880 + Dsui_0568 0.16 -1.2 567,948 - +1.5 567,979 - Dsui_0568 0.22 +1.5 568,225 - Dsui_0568 0.34 +0.5 568,313 + Dsui_0568 0.39 +1.1 568,313 + +1.5 568,321 - Dsui_0568 0.39 -1.4 568,359 - Dsui_0568 0.41 -0.7
Or see this region's nucleotide sequence