Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0564 and Dsui_0565 are separated by 213 nucleotides Dsui_0565 and Dsui_0566 are separated by 38 nucleotides Dsui_0566 and Dsui_0567 overlap by 4 nucleotides Dsui_0567 and Dsui_0568 are separated by 168 nucleotides
Dsui_0564: Dsui_0564 - molybdenum ABC transporter, ATP-binding protein, at 563,942 to 565,039
_0564
Dsui_0565: Dsui_0565 - hypothetical protein, at 565,253 to 565,639
_0565
Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568
_0566
Dsui_0567: Dsui_0567 - molybdenum-pterin binding domain protein, at 566,565 to 567,395
_0567
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2 at 564.974 kb on - strand at 564.983 kb on - strand at 565.020 kb on - strand at 565.072 kb on - strand at 565.137 kb on - strand at 565.212 kb on + strand at 565.289 kb on + strand at 565.297 kb on - strand at 565.388 kb on - strand at 565.392 kb on - strand, within Dsui_0565 at 565.432 kb on - strand at 565.442 kb on - strand, within Dsui_0565 at 565.573 kb on - strand, within Dsui_0565 at 565.587 kb on + strand at 565.984 kb on + strand at 565.992 kb on - strand, within Dsui_0566 at 566.194 kb on - strand, within Dsui_0566 at 566.276 kb on - strand at 566.332 kb on + strand at 566.340 kb on - strand, within Dsui_0566 at 566.562 kb on + strand at 566.792 kb on - strand, within Dsui_0567 at 566.851 kb on - strand at 566.913 kb on - strand, within Dsui_0567 at 566.987 kb on + strand at 567.157 kb on + strand at 567.275 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.390 kb on - strand at 567.440 kb on + strand at 567.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 564,974 - +1.2 564,983 - -0.6 565,020 - -0.1 565,072 - +0.5 565,137 - -0.4 565,212 + -0.1 565,289 + -0.1 565,297 - +0.9 565,388 - +2.5 565,392 - Dsui_0565 0.36 -0.4 565,432 - -0.1 565,442 - Dsui_0565 0.49 -0.1 565,573 - Dsui_0565 0.83 -0.5 565,587 + +2.5 565,984 + +0.5 565,992 - Dsui_0566 0.35 -0.6 566,194 - Dsui_0566 0.58 -1.7 566,276 - +1.5 566,332 + -0.5 566,340 - Dsui_0566 0.74 +0.4 566,562 + +0.3 566,792 - Dsui_0567 0.27 -1.9 566,851 - +1.5 566,913 - Dsui_0567 0.42 -1.3 566,987 + +1.5 567,157 + +1.3 567,275 - +2.5 567,360 - +0.9 567,360 - +1.5 567,360 - -1.1 567,360 - -0.7 567,390 - -1.4 567,440 + +2.5 567,453 - +1.5
Or see this region's nucleotide sequence