Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0439 and Dsui_0440 are separated by 76 nucleotides Dsui_0440 and Dsui_0441 are separated by 79 nucleotides
Dsui_0439: Dsui_0439 - 2-nitropropane dioxygenase-like enzyme, at 446,049 to 446,996
_0439
Dsui_0440: Dsui_0440 - HDOD domain-containing protein, at 447,073 to 447,930
_0440
Dsui_0441: Dsui_0441 - Mg2+ transporter MgtE, at 448,010 to 449,452
_0441
Position (kb) 447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 446.080 kb on - strand at 446.130 kb on - strand at 446.150 kb on + strand, within Dsui_0439 at 446.201 kb on + strand, within Dsui_0439 at 446.247 kb on + strand, within Dsui_0439 at 446.278 kb on - strand at 446.331 kb on - strand, within Dsui_0439 at 446.362 kb on - strand at 446.372 kb on + strand, within Dsui_0439 at 446.380 kb on - strand, within Dsui_0439 at 446.462 kb on - strand, within Dsui_0439 at 446.679 kb on + strand, within Dsui_0439 at 446.699 kb on - strand, within Dsui_0439 at 446.704 kb on - strand, within Dsui_0439 at 446.972 kb on + strand at 446.972 kb on + strand at 446.998 kb on - strand at 447.027 kb on + strand at 447.027 kb on + strand at 447.035 kb on - strand at 447.134 kb on + strand at 447.142 kb on - strand at 447.142 kb on - strand at 447.151 kb on + strand at 447.156 kb on + strand at 447.225 kb on - strand, within Dsui_0440 at 447.290 kb on - strand, within Dsui_0440 at 447.296 kb on + strand, within Dsui_0440 at 447.304 kb on - strand at 447.309 kb on - strand, within Dsui_0440 at 447.336 kb on - strand, within Dsui_0440 at 447.339 kb on + strand, within Dsui_0440 at 447.386 kb on + strand, within Dsui_0440 at 447.393 kb on - strand, within Dsui_0440 at 447.442 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.569 kb on + strand, within Dsui_0440 at 447.788 kb on - strand, within Dsui_0440 at 447.825 kb on + strand, within Dsui_0440 at 447.961 kb on + strand at 448.008 kb on + strand at 448.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 446,080 - +1.5 446,130 - -0.1 446,150 + Dsui_0439 0.11 +0.1 446,201 + Dsui_0439 0.16 -1.3 446,247 + Dsui_0439 0.21 +0.0 446,278 - -0.1 446,331 - Dsui_0439 0.30 -1.3 446,362 - +0.9 446,372 + Dsui_0439 0.34 -0.0 446,380 - Dsui_0439 0.35 -0.9 446,462 - Dsui_0439 0.44 +0.4 446,679 + Dsui_0439 0.66 +0.4 446,699 - Dsui_0439 0.69 +0.5 446,704 - Dsui_0439 0.69 +0.0 446,972 + +0.1 446,972 + +0.8 446,998 - +0.9 447,027 + -0.4 447,027 + -1.4 447,035 - -1.8 447,134 + -0.5 447,142 - +0.6 447,142 - -1.3 447,151 + +0.1 447,156 + -0.1 447,225 - Dsui_0440 0.18 -0.8 447,290 - Dsui_0440 0.25 +0.9 447,296 + Dsui_0440 0.26 +0.3 447,304 - +0.5 447,309 - Dsui_0440 0.28 -0.2 447,336 - Dsui_0440 0.31 -0.3 447,339 + Dsui_0440 0.31 -0.6 447,386 + Dsui_0440 0.36 -1.0 447,393 - Dsui_0440 0.37 -0.7 447,442 + Dsui_0440 0.43 -0.3 447,475 + Dsui_0440 0.47 +0.3 447,475 + Dsui_0440 0.47 +0.7 447,569 + Dsui_0440 0.58 -0.1 447,788 - Dsui_0440 0.83 +1.6 447,825 + Dsui_0440 0.88 -0.2 447,961 + +0.1 448,008 + -0.1 448,016 - -0.1
Or see this region's nucleotide sequence