Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0196 and Dsui_0197 are separated by 69 nucleotides Dsui_0197 and Dsui_0198 are separated by 6 nucleotides Dsui_0198 and Dsui_0199 overlap by 4 nucleotides
Dsui_0196: Dsui_0196 - hypothetical protein, at 197,537 to 199,060
_0196
Dsui_0197: Dsui_0197 - hypothetical protein, at 199,130 to 199,480
_0197
Dsui_0198: Dsui_0198 - phage conserved hypothetical protein, phiE125 gp8 family, at 199,487 to 200,035
_0198
Dsui_0199: Dsui_0199 - Bacteriophage protein of unknown function (DUF646), at 200,032 to 200,517
_0199
Position (kb) 199
200 Strain fitness (log2 ratio) -1
0
1 at 198.160 kb on - strand, within Dsui_0196 at 198.245 kb on + strand, within Dsui_0196 at 198.273 kb on - strand, within Dsui_0196 at 198.293 kb on - strand, within Dsui_0196 at 198.333 kb on + strand, within Dsui_0196 at 198.423 kb on - strand, within Dsui_0196 at 198.680 kb on - strand, within Dsui_0196 at 198.891 kb on - strand, within Dsui_0196 at 198.891 kb on - strand, within Dsui_0196 at 199.089 kb on + strand at 199.089 kb on + strand at 199.153 kb on - strand at 199.265 kb on - strand, within Dsui_0197 at 199.274 kb on - strand, within Dsui_0197 at 199.537 kb on - strand at 199.556 kb on + strand, within Dsui_0198 at 199.645 kb on + strand, within Dsui_0198 at 199.691 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.933 kb on - strand, within Dsui_0198 at 200.070 kb on - strand at 200.121 kb on - strand, within Dsui_0199 at 200.343 kb on + strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 198,160 - Dsui_0196 0.41 -0.0 198,245 + Dsui_0196 0.46 -0.0 198,273 - Dsui_0196 0.48 +0.6 198,293 - Dsui_0196 0.50 -0.4 198,333 + Dsui_0196 0.52 -0.2 198,423 - Dsui_0196 0.58 -1.1 198,680 - Dsui_0196 0.75 -0.6 198,891 - Dsui_0196 0.89 +1.2 198,891 - Dsui_0196 0.89 -0.5 199,089 + +1.0 199,089 + -0.7 199,153 - -0.7 199,265 - Dsui_0197 0.38 -1.1 199,274 - Dsui_0197 0.41 -0.3 199,537 - -0.1 199,556 + Dsui_0198 0.13 +0.3 199,645 + Dsui_0198 0.29 +0.8 199,691 - Dsui_0198 0.37 -0.8 199,884 - Dsui_0198 0.72 -0.2 199,884 - Dsui_0198 0.72 -0.1 199,933 - Dsui_0198 0.81 +0.3 200,070 - +0.0 200,121 - Dsui_0199 0.18 -0.4 200,343 + Dsui_0199 0.64 +0.3 200,454 - Dsui_0199 0.87 -0.4 200,454 - Dsui_0199 0.87 -0.4
Or see this region's nucleotide sequence