Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0175 and Dsui_0176 are separated by 2 nucleotides Dsui_0176 and Dsui_0177 are separated by 171 nucleotides
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Dsui_0176: Dsui_0176 - ribosome modulation factor, at 179,884 to 180,588
_0176
Dsui_0177: Dsui_0177 - hypothetical protein, at 180,760 to 181,641
_0177
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 179.097 kb on + strand, within Dsui_0175 at 179.313 kb on + strand, within Dsui_0175 at 179.358 kb on - strand at 179.510 kb on + strand, within Dsui_0175 at 179.690 kb on + strand at 179.698 kb on - strand at 179.728 kb on - strand at 179.738 kb on + strand at 179.776 kb on + strand at 179.840 kb on + strand at 179.851 kb on - strand at 179.930 kb on + strand at 180.027 kb on - strand at 180.077 kb on + strand, within Dsui_0176 at 180.195 kb on + strand, within Dsui_0176 at 180.288 kb on - strand, within Dsui_0176 at 180.365 kb on - strand at 180.403 kb on - strand, within Dsui_0176 at 180.470 kb on + strand, within Dsui_0176 at 180.470 kb on + strand at 180.478 kb on - strand at 180.478 kb on - strand, within Dsui_0176 at 180.726 kb on - strand at 181.007 kb on - strand, within Dsui_0177 at 181.034 kb on + strand, within Dsui_0177 at 181.145 kb on - strand, within Dsui_0177 at 181.184 kb on + strand at 181.184 kb on + strand, within Dsui_0177 at 181.216 kb on + strand, within Dsui_0177 at 181.387 kb on - strand, within Dsui_0177 at 181.390 kb on + strand at 181.398 kb on - strand, within Dsui_0177 at 181.467 kb on + strand, within Dsui_0177 at 181.503 kb on + strand, within Dsui_0177 at 181.511 kb on - strand, within Dsui_0177 at 181.514 kb on + strand, within Dsui_0177 at 181.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 179,097 + Dsui_0175 0.57 +0.4 179,313 + Dsui_0175 0.69 +2.0 179,358 - +2.0 179,510 + Dsui_0175 0.79 +0.3 179,690 + +1.6 179,698 - +1.0 179,728 - +1.0 179,738 + -0.2 179,776 + +0.6 179,840 + +0.4 179,851 - +0.3 179,930 + -0.4 180,027 - +2.0 180,077 + Dsui_0176 0.27 -1.4 180,195 + Dsui_0176 0.44 -0.1 180,288 - Dsui_0176 0.57 +1.1 180,365 - +0.3 180,403 - Dsui_0176 0.74 -0.2 180,470 + Dsui_0176 0.83 -0.8 180,470 + +1.0 180,478 - +1.0 180,478 - Dsui_0176 0.84 +0.4 180,726 - +0.5 181,007 - Dsui_0177 0.28 +0.8 181,034 + Dsui_0177 0.31 -1.2 181,145 - Dsui_0177 0.44 -0.2 181,184 + +0.3 181,184 + Dsui_0177 0.48 -0.5 181,216 + Dsui_0177 0.52 -0.2 181,387 - Dsui_0177 0.71 -0.2 181,390 + +0.6 181,398 - Dsui_0177 0.72 +0.6 181,467 + Dsui_0177 0.80 +0.6 181,503 + Dsui_0177 0.84 +0.2 181,511 - Dsui_0177 0.85 +1.3 181,514 + Dsui_0177 0.85 -0.9 181,564 + -1.1
Or see this region's nucleotide sequence