Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narQ and narP overlap by 8 nucleotides narP and SO3983 are separated by 89 nucleotides SO3983 and SO3984 are separated by 179 nucleotides
SO3981: narQ - nitrate/nitrite sensor protein NarQ (NCBI ptt file), at 4,117,886 to 4,119,643
narQ
SO3982: narP - DNA-binding nitrate/nitrite response regulator (NCBI ptt file), at 4,119,636 to 4,120,265
narP
SO3983: SO3983 - conserved hypothetical protein (NCBI ptt file), at 4,120,355 to 4,120,729
SO3983
SO3984: SO3984 - magnesium transporter, putative (NCBI ptt file), at 4,120,909 to 4,121,874
SO3984
Position (kb) 4119
4120
4121 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4118.685 kb on + strand, within narQ at 4118.685 kb on + strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.795 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.811 kb on + strand, within narQ at 4118.841 kb on - strand, within narQ at 4118.976 kb on + strand, within narQ at 4119.045 kb on + strand, within narQ at 4119.106 kb on + strand, within narQ at 4119.126 kb on + strand, within narQ at 4119.134 kb on - strand, within narQ at 4119.236 kb on + strand, within narQ at 4119.244 kb on - strand, within narQ at 4119.288 kb on + strand, within narQ at 4119.365 kb on + strand, within narQ at 4119.365 kb on + strand, within narQ at 4119.373 kb on - strand, within narQ at 4119.554 kb on + strand at 4119.759 kb on - strand, within narP at 4119.759 kb on - strand, within narP at 4119.767 kb on - strand, within narP at 4119.769 kb on + strand, within narP at 4119.847 kb on - strand, within narP at 4119.847 kb on - strand, within narP at 4119.969 kb on + strand, within narP at 4120.093 kb on + strand, within narP at 4120.203 kb on + strand at 4120.214 kb on + strand at 4120.216 kb on - strand at 4120.250 kb on - strand at 4120.396 kb on - strand, within SO3983 at 4120.626 kb on + strand, within SO3983 at 4120.690 kb on - strand, within SO3983 at 4120.931 kb on + strand at 4120.939 kb on - strand at 4120.939 kb on - strand at 4120.971 kb on - strand at 4120.978 kb on - strand at 4120.995 kb on + strand at 4121.010 kb on + strand, within SO3984 at 4121.018 kb on - strand, within SO3984 at 4121.056 kb on + strand, within SO3984 at 4121.064 kb on - strand, within SO3984 at 4121.064 kb on - strand, within SO3984 at 4121.123 kb on - strand, within SO3984 at 4121.148 kb on - strand, within SO3984 at 4121.196 kb on + strand, within SO3984
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 4,118,685 + narQ SO3981 0.45 +0.5 4,118,685 + narQ SO3981 0.45 -0.6 4,118,693 - narQ SO3981 0.46 -0.2 4,118,693 - narQ SO3981 0.46 -0.3 4,118,693 - narQ SO3981 0.46 -1.1 4,118,795 - narQ SO3981 0.52 -0.6 4,118,805 - narQ SO3981 0.52 +0.9 4,118,805 - narQ SO3981 0.52 -0.9 4,118,805 - narQ SO3981 0.52 +0.0 4,118,811 + narQ SO3981 0.53 -0.2 4,118,841 - narQ SO3981 0.54 +1.4 4,118,976 + narQ SO3981 0.62 -0.5 4,119,045 + narQ SO3981 0.66 +0.0 4,119,106 + narQ SO3981 0.69 -0.0 4,119,126 + narQ SO3981 0.71 +0.6 4,119,134 - narQ SO3981 0.71 -0.1 4,119,236 + narQ SO3981 0.77 -0.4 4,119,244 - narQ SO3981 0.77 +0.5 4,119,288 + narQ SO3981 0.80 +0.8 4,119,365 + narQ SO3981 0.84 -1.4 4,119,365 + narQ SO3981 0.84 -0.0 4,119,373 - narQ SO3981 0.85 +0.9 4,119,554 + -0.3 4,119,759 - narP SO3982 0.20 +0.0 4,119,759 - narP SO3982 0.20 -1.0 4,119,767 - narP SO3982 0.21 -2.6 4,119,769 + narP SO3982 0.21 +0.3 4,119,847 - narP SO3982 0.33 -0.1 4,119,847 - narP SO3982 0.33 -1.2 4,119,969 + narP SO3982 0.53 -1.5 4,120,093 + narP SO3982 0.73 -0.7 4,120,203 + -0.7 4,120,214 + -0.1 4,120,216 - -2.2 4,120,250 - -0.5 4,120,396 - SO3983 0.11 -0.5 4,120,626 + SO3983 0.72 +0.2 4,120,690 - SO3983 0.89 -0.0 4,120,931 + +1.5 4,120,939 - +0.2 4,120,939 - -3.0 4,120,971 - +0.3 4,120,978 - -1.1 4,120,995 + -0.8 4,121,010 + SO3984 0.10 +0.1 4,121,018 - SO3984 0.11 +0.1 4,121,056 + SO3984 0.15 -0.1 4,121,064 - SO3984 0.16 -0.4 4,121,064 - SO3984 0.16 -0.6 4,121,123 - SO3984 0.22 +0.7 4,121,148 - SO3984 0.25 -0.6 4,121,196 + SO3984 0.30 -1.7
Or see this region's nucleotide sequence