Strain Fitness in Shewanella oneidensis MR-1 around SO3264

Experiment: Bacitracin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.5 mg/ml
3,399,341	-	ilvB	SO3262	0.88	+0.9
3,399,368	+	ilvB	SO3262	0.90	+2.0
3,399,454	-				+2.0
3,399,454	-				+0.1
3,399,499	-				+2.1
3,399,517	-				+0.8
3,399,532	+				+0.9
3,399,592	+		SO3263	0.11	+1.5
3,399,713	-		SO3263	0.27	+1.2
3,399,719	-		SO3263	0.28	+2.0
3,399,725	+		SO3263	0.29	+2.0
3,399,725	+		SO3263	0.29	+0.8
3,399,733	-		SO3263	0.30	+2.1
3,399,852	+		SO3263	0.45	+0.9
3,399,852	+		SO3263	0.45	+1.5
3,399,852	+		SO3263	0.45	+1.9
3,399,857	+		SO3263	0.46	+1.5
3,399,876	+		SO3263	0.48	+1.3
3,399,880	-		SO3263	0.49	+1.5
3,399,880	-		SO3263	0.49	+2.0
3,399,880	-		SO3263	0.49	+1.7
3,400,171	+		SO3263	0.87	+2.7
3,400,171	+		SO3263	0.87	+1.8
3,400,217	+				+1.8
3,400,346	+				-0.3
3,400,346	+				+0.4
3,400,354	-				+0.2
3,400,472	+		SO3264	0.15	-0.8
3,400,578	+		SO3264	0.24	+0.0
3,400,588	-		SO3264	0.25	+1.5
3,400,604	-		SO3264	0.26	+0.9
3,400,613	-		SO3264	0.27	+1.3
3,400,732	+		SO3264	0.37	-0.9
3,400,757	-		SO3264	0.39	+1.5
3,400,778	-		SO3264	0.41	+1.6
3,400,807	-		SO3264	0.43	+0.3
3,400,876	-		SO3264	0.49	+1.3
3,400,935	-		SO3264	0.54	+1.8
3,400,938	+		SO3264	0.54	+0.8
3,400,956	+		SO3264	0.56	-0.6
3,401,003	+		SO3264	0.60	-0.0
3,401,066	-		SO3264	0.65	-0.1
3,401,066	-		SO3264	0.65	-1.0
3,401,154	+		SO3264	0.73	-0.5
3,401,154	+		SO3264	0.73	+0.2
3,401,162	-		SO3264	0.73	-0.4
3,401,162	-		SO3264	0.73	+2.1
3,401,162	-		SO3264	0.73	-0.9
3,401,191	+		SO3264	0.76	+0.1
3,401,227	+		SO3264	0.79	+0.0
3,401,237	+		SO3264	0.80	+0.1
3,401,275	+		SO3264	0.83	+0.1
3,401,295	+		SO3264	0.84	-0.5
3,401,295	+		SO3264	0.84	+0.8
3,401,302	-		SO3264	0.85	+1.5
3,401,303	-		SO3264	0.85	+2.2
3,401,303	-		SO3264	0.85	+1.6
3,401,348	+		SO3264	0.89	-0.3
3,401,356	-		SO3264	0.90	+2.1
3,401,426	+				-0.2
3,401,434	-				+1.8
3,401,436	+				-0.6
3,401,436	+				+0.8
3,401,444	-				+2.3
3,401,524	-				+2.1
3,401,593	+				+1.4
3,401,602	-		SO3265	0.10	+1.3
3,401,604	+		SO3265	0.10	+1.7
3,401,723	-		SO3265	0.20	+0.2
3,401,725	-		SO3265	0.20	+0.6
3,401,863	+		SO3265	0.31	+0.5
3,401,876	+		SO3265	0.32	+1.6
3,401,884	-		SO3265	0.33	+1.9
3,401,975	+		SO3265	0.40	+2.7
3,402,023	+		SO3265	0.44	+0.7
3,402,023	+		SO3265	0.44	+2.4
3,402,023	+		SO3265	0.44	+1.2
3,402,031	-		SO3265	0.45	+1.7
3,402,031	-		SO3265	0.45	+1.6
3,402,031	-		SO3265	0.45	+0.8
3,402,096	+		SO3265	0.50	+0.7
3,402,206	+		SO3265	0.59	+2.2
3,402,277	+		SO3265	0.65	+2.2
3,402,290	-		SO3265	0.66	+2.1
3,402,290	-		SO3265	0.66	+1.1
3,402,295	-		SO3265	0.66	+1.7
3,402,373	+		SO3265	0.72	+2.2
3,402,373	+		SO3265	0.72	+1.2
3,402,420	+		SO3265	0.76	+2.6
3,402,470	-		SO3265	0.80	+1.2
3,402,470	-		SO3265	0.80	+1.1
3,402,470	-		SO3265	0.80	+1.6
3,402,478	+		SO3265	0.81	+2.4