Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2563 and SO2564 are separated by 250 nucleotides SO2564 and SO2565 are separated by 367 nucleotides
SO2563: SO2563 - metallo-beta-lactamase family protein (NCBI ptt file), at 2,692,498 to 2,693,301
SO2563
SO2564: SO2564 - transglycosylase, Slt family (NCBI ptt file), at 2,693,552 to 2,695,099
SO2564
SO2565: SO2565 - intracellular proteinase inhibitor domain protein (NCBI ptt file), at 2,695,467 to 2,696,114
SO2565
Position (kb)
2693
2694
2695
2696 Strain fitness (log2 ratio)
-1
0
1
2 at 2692.579 kb on - strand, within SO2563 at 2692.662 kb on + strand, within SO2563 at 2692.664 kb on + strand, within SO2563 at 2692.665 kb on + strand, within SO2563 at 2692.723 kb on + strand, within SO2563 at 2692.837 kb on - strand, within SO2563 at 2692.853 kb on - strand, within SO2563 at 2692.965 kb on - strand, within SO2563 at 2692.981 kb on - strand, within SO2563 at 2693.010 kb on + strand, within SO2563 at 2693.082 kb on + strand, within SO2563 at 2693.198 kb on + strand, within SO2563 at 2693.210 kb on + strand, within SO2563 at 2693.210 kb on + strand, within SO2563 at 2693.210 kb on + strand, within SO2563 at 2693.210 kb on + strand, within SO2563 at 2693.246 kb on + strand at 2693.273 kb on + strand at 2693.593 kb on + strand at 2693.593 kb on + strand at 2693.593 kb on + strand at 2693.601 kb on - strand at 2693.601 kb on - strand at 2693.657 kb on - strand at 2693.813 kb on - strand, within SO2564 at 2693.843 kb on + strand, within SO2564 at 2693.982 kb on + strand, within SO2564 at 2693.992 kb on - strand, within SO2564 at 2694.063 kb on + strand, within SO2564 at 2694.414 kb on - strand, within SO2564 at 2694.414 kb on - strand, within SO2564 at 2694.432 kb on - strand, within SO2564 at 2694.456 kb on + strand, within SO2564 at 2694.691 kb on + strand, within SO2564 at 2694.691 kb on + strand, within SO2564 at 2694.800 kb on + strand, within SO2564 at 2694.925 kb on + strand, within SO2564 at 2694.947 kb on + strand at 2695.021 kb on - strand at 2695.023 kb on + strand at 2695.024 kb on + strand at 2695.031 kb on - strand at 2695.168 kb on + strand at 2695.251 kb on + strand at 2695.373 kb on + strand at 2695.444 kb on - strand at 2695.484 kb on + strand at 2695.634 kb on - strand, within SO2565 at 2695.697 kb on + strand, within SO2565 at 2695.705 kb on - strand, within SO2565 at 2695.842 kb on - strand, within SO2565 at 2695.911 kb on - strand, within SO2565 at 2695.988 kb on - strand, within SO2565 at 2696.036 kb on + strand, within SO2565
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 2,692,579 - SO2563 0.10 -1.2 2,692,662 + SO2563 0.20 +2.2 2,692,664 + SO2563 0.21 -0.5 2,692,665 + SO2563 0.21 -1.7 2,692,723 + SO2563 0.28 -0.4 2,692,837 - SO2563 0.42 +0.7 2,692,853 - SO2563 0.44 +0.5 2,692,965 - SO2563 0.58 -1.0 2,692,981 - SO2563 0.60 -0.0 2,693,010 + SO2563 0.64 +0.2 2,693,082 + SO2563 0.73 +0.4 2,693,198 + SO2563 0.87 -0.5 2,693,210 + SO2563 0.89 -0.3 2,693,210 + SO2563 0.89 +0.4 2,693,210 + SO2563 0.89 +1.2 2,693,210 + SO2563 0.89 -0.9 2,693,246 + -0.1 2,693,273 + -0.4 2,693,593 + +0.2 2,693,593 + -0.0 2,693,593 + +1.3 2,693,601 - +0.6 2,693,601 - +0.1 2,693,657 - +1.7 2,693,813 - SO2564 0.17 +0.7 2,693,843 + SO2564 0.19 +0.8 2,693,982 + SO2564 0.28 +0.7 2,693,992 - SO2564 0.28 +0.7 2,694,063 + SO2564 0.33 -0.5 2,694,414 - SO2564 0.56 +1.1 2,694,414 - SO2564 0.56 +1.6 2,694,432 - SO2564 0.57 +0.9 2,694,456 + SO2564 0.58 +0.6 2,694,691 + SO2564 0.74 -0.1 2,694,691 + SO2564 0.74 +1.1 2,694,800 + SO2564 0.81 +0.1 2,694,925 + SO2564 0.89 +1.3 2,694,947 + -1.2 2,695,021 - +0.2 2,695,023 + +0.1 2,695,024 + -0.0 2,695,031 - -0.8 2,695,168 + +1.1 2,695,251 + -0.7 2,695,373 + +0.8 2,695,444 - +0.0 2,695,484 + +0.1 2,695,634 - SO2565 0.26 +0.1 2,695,697 + SO2565 0.35 -0.4 2,695,705 - SO2565 0.37 -0.5 2,695,842 - SO2565 0.58 -0.5 2,695,911 - SO2565 0.69 -0.6 2,695,988 - SO2565 0.80 -0.3 2,696,036 + SO2565 0.88 +0.1
Or see this region's nucleotide sequence