Strain Fitness in Shewanella oneidensis MR-1 around SO2480

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdsB and SO2479 are separated by 28 nucleotidesSO2479 and SO2480 are separated by 715 nucleotidesSO2480 and SO2481 are separated by 219 nucleotides SO2478: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 2,599,356 to 2,600,093 kdsB SO2479: SO2479 - hypothetical protein (NCBI ptt file), at 2,600,122 to 2,600,358 SO2479 SO2480: SO2480 - hypothetical protein (NCBI ptt file), at 2,601,074 to 2,602,108 SO2480 SO2481: SO2481 - conserved hypothetical protein (NCBI ptt file), at 2,602,328 to 2,603,710 SO2481 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -2 -1 0 1at 2600.170 kb on + strand, within SO2479at 2600.250 kb on + strand, within SO2479at 2600.319 kb on + strand, within SO2479at 2600.512 kb on - strandat 2600.534 kb on + strandat 2600.544 kb on + strandat 2601.043 kb on - strandat 2601.068 kb on - strandat 2601.452 kb on + strand, within SO2480at 2601.460 kb on - strand, within SO2480at 2601.494 kb on - strand, within SO2480at 2601.549 kb on - strand, within SO2480at 2601.549 kb on - strand, within SO2480at 2601.610 kb on - strand, within SO2480at 2601.610 kb on - strand, within SO2480at 2602.082 kb on + strandat 2602.119 kb on + strandat 2602.127 kb on - strandat 2602.127 kb on - strandat 2602.339 kb on + strandat 2602.396 kb on + strandat 2602.404 kb on - strandat 2602.493 kb on - strand, within SO2481at 2602.580 kb on + strand, within SO2481at 2602.598 kb on + strand, within SO2481at 2602.598 kb on + strand, within SO2481at 2602.598 kb on + strand, within SO2481at 2602.838 kb on - strand, within SO2481at 2602.949 kb on + strand, within SO2481at 2602.956 kb on - strand, within SO2481

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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2,600,170 + SO2479 0.20 -0.1
2,600,250 + SO2479 0.54 -1.1
2,600,319 + SO2479 0.83 -0.4
2,600,512 - +1.6
2,600,534 + -0.3
2,600,544 + -0.1
2,601,043 - -0.5
2,601,068 - -0.4
2,601,452 + SO2480 0.37 +0.6
2,601,460 - SO2480 0.37 +1.3
2,601,494 - SO2480 0.41 -2.1
2,601,549 - SO2480 0.46 +1.1
2,601,549 - SO2480 0.46 +1.4
2,601,610 - SO2480 0.52 -0.2
2,601,610 - SO2480 0.52 -0.3
2,602,082 + -0.8
2,602,119 + -0.2
2,602,127 - +0.5
2,602,127 - +0.0
2,602,339 + +0.5
2,602,396 + -0.5
2,602,404 - -0.2
2,602,493 - SO2481 0.12 -1.6
2,602,580 + SO2481 0.18 -0.2
2,602,598 + SO2481 0.20 -0.6
2,602,598 + SO2481 0.20 -0.0
2,602,598 + SO2481 0.20 -1.0
2,602,838 - SO2481 0.37 -0.4
2,602,949 + SO2481 0.45 +0.3
2,602,956 - SO2481 0.45 -0.0

Or see this region's nucleotide sequence