Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdsB and SO2479 are separated by 28 nucleotides SO2479 and SO2480 are separated by 715 nucleotides SO2480 and SO2481 are separated by 219 nucleotides
SO2478: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 2,599,356 to 2,600,093
kdsB
SO2479: SO2479 - hypothetical protein (NCBI ptt file), at 2,600,122 to 2,600,358
SO2479
SO2480: SO2480 - hypothetical protein (NCBI ptt file), at 2,601,074 to 2,602,108
SO2480
SO2481: SO2481 - conserved hypothetical protein (NCBI ptt file), at 2,602,328 to 2,603,710
SO2481
Position (kb)
2601
2602
2603 Strain fitness (log2 ratio)
-2
-1
0
1 at 2600.170 kb on + strand, within SO2479 at 2600.250 kb on + strand, within SO2479 at 2600.319 kb on + strand, within SO2479 at 2600.512 kb on - strand at 2600.534 kb on + strand at 2600.544 kb on + strand at 2601.043 kb on - strand at 2601.068 kb on - strand at 2601.452 kb on + strand, within SO2480 at 2601.460 kb on - strand, within SO2480 at 2601.494 kb on - strand, within SO2480 at 2601.549 kb on - strand, within SO2480 at 2601.549 kb on - strand, within SO2480 at 2601.610 kb on - strand, within SO2480 at 2601.610 kb on - strand, within SO2480 at 2602.082 kb on + strand at 2602.119 kb on + strand at 2602.127 kb on - strand at 2602.127 kb on - strand at 2602.339 kb on + strand at 2602.396 kb on + strand at 2602.404 kb on - strand at 2602.493 kb on - strand, within SO2481 at 2602.580 kb on + strand, within SO2481 at 2602.598 kb on + strand, within SO2481 at 2602.598 kb on + strand, within SO2481 at 2602.598 kb on + strand, within SO2481 at 2602.838 kb on - strand, within SO2481 at 2602.949 kb on + strand, within SO2481 at 2602.956 kb on - strand, within SO2481
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 2,600,170 + SO2479 0.20 -0.1 2,600,250 + SO2479 0.54 -1.1 2,600,319 + SO2479 0.83 -0.4 2,600,512 - +1.6 2,600,534 + -0.3 2,600,544 + -0.1 2,601,043 - -0.5 2,601,068 - -0.4 2,601,452 + SO2480 0.37 +0.6 2,601,460 - SO2480 0.37 +1.3 2,601,494 - SO2480 0.41 -2.1 2,601,549 - SO2480 0.46 +1.1 2,601,549 - SO2480 0.46 +1.4 2,601,610 - SO2480 0.52 -0.2 2,601,610 - SO2480 0.52 -0.3 2,602,082 + -0.8 2,602,119 + -0.2 2,602,127 - +0.5 2,602,127 - +0.0 2,602,339 + +0.5 2,602,396 + -0.5 2,602,404 - -0.2 2,602,493 - SO2481 0.12 -1.6 2,602,580 + SO2481 0.18 -0.2 2,602,598 + SO2481 0.20 -0.6 2,602,598 + SO2481 0.20 -0.0 2,602,598 + SO2481 0.20 -1.0 2,602,838 - SO2481 0.37 -0.4 2,602,949 + SO2481 0.45 +0.3 2,602,956 - SO2481 0.45 -0.0
Or see this region's nucleotide sequence