Strain Fitness in Shewanella oneidensis MR-1 around SO2437
Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,547,747 | - | SO2436 | 0.54 | -0.0 | |
2,547,779 | + | SO2436 | 0.57 | +0.7 | |
2,547,787 | - | SO2436 | 0.58 | +0.6 | |
2,547,986 | + | SO2436 | 0.78 | +0.6 | |
2,548,027 | - | SO2436 | 0.82 | +1.8 | |
2,548,076 | - | SO2436 | 0.87 | +0.9 | |
2,548,204 | - | -0.1 | |||
2,548,228 | + | -1.1 | |||
2,548,228 | + | +0.9 | |||
2,548,267 | + | +1.8 | |||
2,548,267 | + | +1.6 | |||
2,548,267 | + | +1.3 | |||
2,548,349 | + | +2.6 | |||
2,548,460 | - | +3.3 | |||
2,548,466 | + | SO2437 | 0.10 | +2.9 | |
2,548,474 | - | SO2437 | 0.11 | +2.6 | |
2,548,474 | - | SO2437 | 0.11 | +3.1 | |
2,548,568 | + | SO2437 | 0.16 | +3.6 | |
2,548,576 | - | SO2437 | 0.16 | +3.1 | |
2,548,792 | - | SO2437 | 0.27 | +3.6 | |
2,548,805 | + | SO2437 | 0.28 | +2.5 | |
2,548,805 | + | SO2437 | 0.28 | +2.7 | |
2,548,876 | + | SO2437 | 0.32 | +3.2 | |
2,549,198 | + | SO2437 | 0.49 | +2.5 | |
2,549,258 | - | SO2437 | 0.52 | +3.3 | |
2,549,443 | + | SO2437 | 0.62 | +2.6 | |
2,549,451 | - | SO2437 | 0.62 | +2.8 | |
2,549,475 | + | SO2437 | 0.64 | +2.7 | |
2,549,655 | + | SO2437 | 0.73 | +2.8 | |
2,549,957 | - | SO2437 | 0.89 | +3.2 | |
2,549,988 | - | +3.5 | |||
2,550,415 | + | -1.0 | |||
2,550,468 | - | +0.3 | |||
2,551,039 | - | SO2438 | 0.71 | +0.6 | |
2,551,064 | - | SO2438 | 0.73 | -0.3 |
Or see this region's nucleotide sequence