Strain Fitness in Shewanella oneidensis MR-1 around SO2228
Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.5 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,344,458 | + | +1.4 | |||
| 2,344,552 | + | +0.5 | |||
| 2,344,612 | + | +0.3 | |||
| 2,344,843 | + | +1.2 | |||
| 2,344,864 | - | +0.0 | |||
| 2,344,898 | + | -0.1 | |||
| 2,344,989 | - | -3.9 | |||
| 2,345,079 | - | -0.9 | |||
| 2,345,107 | - | +0.3 | |||
| 2,345,317 | + | SO2228 | 0.48 | +1.0 | |
| 2,345,324 | + | SO2228 | 0.50 | +0.2 | |
| 2,345,358 | + | SO2228 | 0.58 | +0.4 | |
| 2,345,377 | - | SO2228 | 0.63 | -0.3 | |
| 2,345,481 | + | SO2228 | 0.88 | +1.1 | |
| 2,345,526 | + | +0.4 | |||
| 2,345,573 | + | +1.3 | |||
| 2,345,573 | + | +0.7 | |||
| 2,345,745 | + | +1.0 | |||
| 2,345,802 | + | -0.5 | |||
| 2,345,802 | + | -0.4 | |||
| 2,345,810 | - | +0.2 | |||
| 2,345,877 | + | -0.3 | |||
| 2,345,955 | + | +0.8 | |||
| 2,345,968 | - | +0.4 | |||
| 2,345,992 | - | +1.2 | |||
| 2,346,061 | - | hrpA | SO2229 | 0.11 | +1.6 |
| 2,346,100 | + | hrpA | SO2229 | 0.12 | +0.2 |
| 2,346,115 | - | hrpA | SO2229 | 0.12 | +0.2 |
| 2,346,115 | - | hrpA | SO2229 | 0.12 | +0.4 |
| 2,346,115 | - | hrpA | SO2229 | 0.12 | -0.5 |
| 2,346,132 | + | hrpA | SO2229 | 0.12 | +0.4 |
| 2,346,138 | + | hrpA | SO2229 | 0.13 | +0.2 |
Or see this region's nucleotide sequence