Strain Fitness in Shewanella oneidensis MR-1 around SO0945

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0944 and SO0945 are separated by 85 nucleotidesSO0945 and SO0946 overlap by 1 nucleotides SO0944: SO0944 - conserved hypothetical protein (NCBI ptt file), at 976,359 to 977,147 SO0944 SO0945: SO0945 - AcrB/AcrD/AcrF family protein (NCBI ptt file), at 977,233 to 980,436 SO0945 SO0946: SO0946 - conserved hypothetical protein (NCBI ptt file), at 980,436 to 981,563 SO0946 Position (kb) 977 978 979 980 981Strain fitness (log2 ratio) -3 -2 -1 0 1at 976.235 kb on - strandat 976.242 kb on + strandat 976.308 kb on - strandat 976.378 kb on + strandat 976.464 kb on + strand, within SO0944at 976.464 kb on + strand, within SO0944at 976.472 kb on - strand, within SO0944at 976.519 kb on + strand, within SO0944at 976.519 kb on + strand, within SO0944at 976.519 kb on + strand, within SO0944at 976.519 kb on + strand, within SO0944at 976.527 kb on - strand, within SO0944at 976.554 kb on + strand, within SO0944at 976.610 kb on + strand, within SO0944at 976.618 kb on - strand, within SO0944at 976.736 kb on - strand, within SO0944at 976.750 kb on + strand, within SO0944at 976.773 kb on + strand, within SO0944at 976.793 kb on - strand, within SO0944at 976.810 kb on + strand, within SO0944at 976.810 kb on + strand, within SO0944at 976.818 kb on - strand, within SO0944at 976.818 kb on - strand, within SO0944at 976.818 kb on - strand, within SO0944at 976.832 kb on - strand, within SO0944at 976.832 kb on - strand, within SO0944at 976.957 kb on + strand, within SO0944at 976.962 kb on + strand, within SO0944at 976.962 kb on + strand, within SO0944at 976.972 kb on + strand, within SO0944at 976.980 kb on - strand, within SO0944at 976.989 kb on + strand, within SO0944at 977.103 kb on - strandat 977.218 kb on + strandat 977.226 kb on + strandat 977.226 kb on - strandat 977.302 kb on + strandat 977.389 kb on - strandat 977.396 kb on + strandat 977.400 kb on + strandat 977.557 kb on + strand, within SO0945at 977.648 kb on + strand, within SO0945at 977.676 kb on + strand, within SO0945at 977.676 kb on + strand, within SO0945at 977.684 kb on - strand, within SO0945at 977.689 kb on + strand, within SO0945at 977.695 kb on - strand, within SO0945at 977.697 kb on - strand, within SO0945at 977.703 kb on + strand, within SO0945at 977.769 kb on + strand, within SO0945at 977.800 kb on + strand, within SO0945at 977.815 kb on - strand, within SO0945at 977.836 kb on + strand, within SO0945at 977.862 kb on + strand, within SO0945at 977.878 kb on + strand, within SO0945at 977.886 kb on - strand, within SO0945at 977.886 kb on - strand, within SO0945at 978.046 kb on - strand, within SO0945at 978.075 kb on + strand, within SO0945at 978.075 kb on + strand, within SO0945at 978.085 kb on + strand, within SO0945at 978.085 kb on + strand, within SO0945at 978.085 kb on + strand, within SO0945at 978.085 kb on + strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.093 kb on - strand, within SO0945at 978.134 kb on - strand, within SO0945at 978.146 kb on - strand, within SO0945at 978.171 kb on + strand, within SO0945at 978.179 kb on - strand, within SO0945at 978.246 kb on + strand, within SO0945at 978.253 kb on + strand, within SO0945at 978.259 kb on + strand, within SO0945at 978.260 kb on - strand, within SO0945at 978.261 kb on - strand, within SO0945at 978.366 kb on + strand, within SO0945at 978.479 kb on + strand, within SO0945at 978.542 kb on + strand, within SO0945at 978.542 kb on + strand, within SO0945at 978.542 kb on + strand, within SO0945at 978.612 kb on + strand, within SO0945at 978.681 kb on + strand, within SO0945at 978.681 kb on + strand, within SO0945at 978.689 kb on - strand, within SO0945at 978.701 kb on + strand, within SO0945at 978.706 kb on + strand, within SO0945at 978.714 kb on - strand, within SO0945at 978.794 kb on - strand, within SO0945at 978.802 kb on - strand, within SO0945at 978.805 kb on + strand, within SO0945at 978.813 kb on - strand, within SO0945at 978.854 kb on - strand, within SO0945at 978.887 kb on + strand, within SO0945at 979.091 kb on + strand, within SO0945at 979.111 kb on + strand, within SO0945at 979.111 kb on + strand, within SO0945at 979.119 kb on - strand, within SO0945at 979.400 kb on - strand, within SO0945at 979.410 kb on - strand, within SO0945at 979.460 kb on - strand, within SO0945at 979.473 kb on + strand, within SO0945at 979.473 kb on + strand, within SO0945at 979.473 kb on + strand, within SO0945at 979.540 kb on - strand, within SO0945at 979.624 kb on + strand, within SO0945at 979.626 kb on - strand, within SO0945at 979.626 kb on - strand, within SO0945at 979.849 kb on - strand, within SO0945at 979.875 kb on + strand, within SO0945at 979.902 kb on + strand, within SO0945at 979.904 kb on + strand, within SO0945at 979.912 kb on - strand, within SO0945at 980.074 kb on + strand, within SO0945at 980.116 kb on + strandat 980.124 kb on - strandat 980.124 kb on - strandat 980.124 kb on - strandat 980.150 kb on - strandat 980.160 kb on - strandat 980.259 kb on + strandat 980.261 kb on - strandat 980.264 kb on + strandat 980.264 kb on + strandat 980.264 kb on + strandat 980.278 kb on - strandat 980.320 kb on - strandat 980.329 kb on + strandat 980.329 kb on + strandat 980.339 kb on + strandat 980.339 kb on + strandat 980.356 kb on + strandat 980.356 kb on + strandat 980.390 kb on + strandat 980.395 kb on + strandat 980.510 kb on - strandat 980.570 kb on + strand, within SO0946at 980.580 kb on + strand, within SO0946at 980.641 kb on + strand, within SO0946at 980.681 kb on + strand, within SO0946at 980.689 kb on - strand, within SO0946at 980.714 kb on - strand, within SO0946at 980.824 kb on + strand, within SO0946at 980.906 kb on + strand, within SO0946at 980.914 kb on - strand, within SO0946at 980.950 kb on - strand, within SO0946at 980.960 kb on - strand, within SO0946at 981.025 kb on - strand, within SO0946at 981.075 kb on + strand, within SO0946at 981.123 kb on + strand, within SO0946at 981.198 kb on + strand, within SO0946at 981.206 kb on - strand, within SO0946at 981.212 kb on - strand, within SO0946at 981.271 kb on + strand, within SO0946at 981.276 kb on + strand, within SO0946at 981.284 kb on - strand, within SO0946at 981.406 kb on - strand, within SO0946

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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976,235 - +0.5
976,242 + +1.1
976,308 - -0.1
976,378 + -0.1
976,464 + SO0944 0.13 +0.0
976,464 + SO0944 0.13 +0.7
976,472 - SO0944 0.14 -0.0
976,519 + SO0944 0.20 -2.9
976,519 + SO0944 0.20 +0.6
976,519 + SO0944 0.20 -0.2
976,519 + SO0944 0.20 -0.0
976,527 - SO0944 0.21 +0.6
976,554 + SO0944 0.25 -0.9
976,610 + SO0944 0.32 -0.2
976,618 - SO0944 0.33 -0.1
976,736 - SO0944 0.48 +0.4
976,750 + SO0944 0.50 -1.1
976,773 + SO0944 0.52 -0.6
976,793 - SO0944 0.55 -0.6
976,810 + SO0944 0.57 +1.2
976,810 + SO0944 0.57 +0.4
976,818 - SO0944 0.58 -0.3
976,818 - SO0944 0.58 -0.9
976,818 - SO0944 0.58 +0.4
976,832 - SO0944 0.60 -0.0
976,832 - SO0944 0.60 +0.6
976,957 + SO0944 0.76 +1.5
976,962 + SO0944 0.76 +1.2
976,962 + SO0944 0.76 +0.6
976,972 + SO0944 0.78 -1.4
976,980 - SO0944 0.79 +0.1
976,989 + SO0944 0.80 -0.2
977,103 - -0.4
977,218 + -0.4
977,226 + +1.3
977,226 - -0.1
977,302 + -1.2
977,389 - -0.7
977,396 + -0.5
977,400 + -1.7
977,557 + SO0945 0.10 +0.3
977,648 + SO0945 0.13 +0.8
977,676 + SO0945 0.14 +0.6
977,676 + SO0945 0.14 -0.6
977,684 - SO0945 0.14 +0.6
977,689 + SO0945 0.14 -0.1
977,695 - SO0945 0.14 -0.4
977,697 - SO0945 0.14 -0.3
977,703 + SO0945 0.15 -1.3
977,769 + SO0945 0.17 -0.3
977,800 + SO0945 0.18 +0.8
977,815 - SO0945 0.18 +0.3
977,836 + SO0945 0.19 +0.2
977,862 + SO0945 0.20 +0.1
977,878 + SO0945 0.20 +1.0
977,886 - SO0945 0.20 -0.7
977,886 - SO0945 0.20 -0.4
978,046 - SO0945 0.25 +0.3
978,075 + SO0945 0.26 -0.2
978,075 + SO0945 0.26 +0.1
978,085 + SO0945 0.27 -0.2
978,085 + SO0945 0.27 -0.3
978,085 + SO0945 0.27 -0.2
978,085 + SO0945 0.27 +0.4
978,093 - SO0945 0.27 -0.7
978,093 - SO0945 0.27 +0.6
978,093 - SO0945 0.27 -0.2
978,093 - SO0945 0.27 +0.7
978,093 - SO0945 0.27 +0.4
978,093 - SO0945 0.27 -0.4
978,093 - SO0945 0.27 +0.2
978,093 - SO0945 0.27 +0.2
978,093 - SO0945 0.27 +0.2
978,093 - SO0945 0.27 +0.8
978,093 - SO0945 0.27 -1.1
978,093 - SO0945 0.27 +0.2
978,134 - SO0945 0.28 -0.2
978,146 - SO0945 0.28 +0.3
978,171 + SO0945 0.29 -0.5
978,179 - SO0945 0.30 +0.9
978,246 + SO0945 0.32 +0.1
978,253 + SO0945 0.32 +0.1
978,259 + SO0945 0.32 +0.1
978,260 - SO0945 0.32 -0.4
978,261 - SO0945 0.32 +0.6
978,366 + SO0945 0.35 +1.3
978,479 + SO0945 0.39 -0.5
978,542 + SO0945 0.41 +1.1
978,542 + SO0945 0.41 +0.7
978,542 + SO0945 0.41 +0.9
978,612 + SO0945 0.43 +0.8
978,681 + SO0945 0.45 -0.2
978,681 + SO0945 0.45 +0.3
978,689 - SO0945 0.45 +0.6
978,701 + SO0945 0.46 -0.1
978,706 + SO0945 0.46 -0.0
978,714 - SO0945 0.46 +1.6
978,794 - SO0945 0.49 -1.0
978,802 - SO0945 0.49 +0.1
978,805 + SO0945 0.49 -1.7
978,813 - SO0945 0.49 +0.1
978,854 - SO0945 0.51 -3.4
978,887 + SO0945 0.52 -0.3
979,091 + SO0945 0.58 -0.6
979,111 + SO0945 0.59 -0.1
979,111 + SO0945 0.59 -0.3
979,119 - SO0945 0.59 -0.2
979,400 - SO0945 0.68 -0.4
979,410 - SO0945 0.68 -1.0
979,460 - SO0945 0.70 +0.3
979,473 + SO0945 0.70 +0.5
979,473 + SO0945 0.70 -0.5
979,473 + SO0945 0.70 +0.8
979,540 - SO0945 0.72 +0.2
979,624 + SO0945 0.75 -0.0
979,626 - SO0945 0.75 +0.0
979,626 - SO0945 0.75 -0.2
979,849 - SO0945 0.82 -1.0
979,875 + SO0945 0.82 -0.2
979,902 + SO0945 0.83 +1.2
979,904 + SO0945 0.83 -2.2
979,912 - SO0945 0.84 +0.3
980,074 + SO0945 0.89 +0.4
980,116 + +1.0
980,124 - -0.5
980,124 - +0.6
980,124 - -0.2
980,150 - +0.3
980,160 - +0.9
980,259 + -0.5
980,261 - -2.0
980,264 + -0.2
980,264 + +0.4
980,264 + -0.1
980,278 - +0.2
980,320 - +0.3
980,329 + -0.1
980,329 + -0.5
980,339 + -2.3
980,339 + -0.8
980,356 + -0.3
980,356 + +0.4
980,390 + +0.7
980,395 + -0.4
980,510 - +0.3
980,570 + SO0946 0.12 +0.7
980,580 + SO0946 0.13 -0.5
980,641 + SO0946 0.18 +1.2
980,681 + SO0946 0.22 -0.2
980,689 - SO0946 0.22 -0.2
980,714 - SO0946 0.25 +0.8
980,824 + SO0946 0.34 +0.8
980,906 + SO0946 0.42 +0.1
980,914 - SO0946 0.42 +0.4
980,950 - SO0946 0.46 -0.7
980,960 - SO0946 0.46 +0.0
981,025 - SO0946 0.52 +0.8
981,075 + SO0946 0.57 -0.6
981,123 + SO0946 0.61 -0.1
981,198 + SO0946 0.68 -0.5
981,206 - SO0946 0.68 -1.2
981,212 - SO0946 0.69 +0.6
981,271 + SO0946 0.74 -0.4
981,276 + SO0946 0.74 +0.1
981,284 - SO0946 0.75 +0.9
981,406 - SO0946 0.86 -0.2

Or see this region's nucleotide sequence