Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0864 and SO0865 are separated by 213 nucleotides SO0865 and SO0866 are separated by 14 nucleotides SO0866 and SO0867 are separated by 449 nucleotides
SO0864: SO0864 - transcriptional regulator, LuxR family (NCBI ptt file), at 892,542 to 893,309
SO0864
SO0865: SO0865 - conserved hypothetical protein (NCBI ptt file), at 893,523 to 895,031
SO0865
SO0866: SO0866 - minor curlin subunit CsgB, putative (NCBI ptt file), at 895,046 to 895,465
SO0866
SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371
SO0867
Position (kb) 893
894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 892.597 kb on + strand at 892.732 kb on + strand, within SO0864 at 892.802 kb on + strand, within SO0864 at 892.812 kb on + strand, within SO0864 at 892.812 kb on + strand, within SO0864 at 892.820 kb on - strand, within SO0864 at 892.846 kb on + strand, within SO0864 at 892.859 kb on + strand, within SO0864 at 892.859 kb on - strand, within SO0864 at 892.980 kb on - strand, within SO0864 at 893.113 kb on + strand, within SO0864 at 893.121 kb on - strand, within SO0864 at 893.121 kb on - strand, within SO0864 at 893.256 kb on + strand at 893.256 kb on + strand at 893.256 kb on + strand at 893.274 kb on - strand at 893.289 kb on - strand at 893.325 kb on + strand at 893.515 kb on + strand at 893.534 kb on - strand at 893.547 kb on + strand at 893.567 kb on - strand at 893.583 kb on + strand at 893.602 kb on - strand at 893.609 kb on - strand at 893.616 kb on + strand at 893.657 kb on - strand at 893.886 kb on + strand, within SO0865 at 893.918 kb on - strand, within SO0865 at 893.978 kb on - strand, within SO0865 at 894.048 kb on + strand, within SO0865 at 894.065 kb on + strand, within SO0865 at 894.147 kb on - strand, within SO0865 at 894.157 kb on + strand, within SO0865 at 894.183 kb on + strand, within SO0865 at 894.212 kb on - strand, within SO0865 at 894.223 kb on + strand, within SO0865 at 894.231 kb on - strand, within SO0865 at 894.353 kb on + strand, within SO0865 at 894.353 kb on + strand, within SO0865 at 894.582 kb on + strand, within SO0865 at 894.739 kb on - strand, within SO0865 at 894.825 kb on + strand, within SO0865 at 894.825 kb on + strand, within SO0865 at 894.833 kb on - strand, within SO0865 at 894.833 kb on - strand at 894.841 kb on - strand, within SO0865 at 894.886 kb on + strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.973 kb on - strand at 895.044 kb on + strand at 895.150 kb on + strand, within SO0866 at 895.290 kb on + strand, within SO0866 at 895.313 kb on - strand, within SO0866 at 895.323 kb on - strand, within SO0866 at 895.349 kb on + strand, within SO0866 at 895.511 kb on + strand at 895.654 kb on + strand at 895.669 kb on + strand at 895.860 kb on + strand at 895.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 892,597 + -1.1 892,732 + SO0864 0.25 -0.3 892,802 + SO0864 0.34 +0.7 892,812 + SO0864 0.35 +0.3 892,812 + SO0864 0.35 +0.7 892,820 - SO0864 0.36 -0.9 892,846 + SO0864 0.40 +0.5 892,859 + SO0864 0.41 +0.4 892,859 - SO0864 0.41 +0.3 892,980 - SO0864 0.57 -0.5 893,113 + SO0864 0.74 -3.0 893,121 - SO0864 0.75 +0.1 893,121 - SO0864 0.75 -0.5 893,256 + +1.0 893,256 + -0.4 893,256 + -0.5 893,274 - -0.6 893,289 - +0.3 893,325 + +0.3 893,515 + +0.6 893,534 - +0.6 893,547 + -0.5 893,567 - -0.2 893,583 + -0.6 893,602 - -0.1 893,609 - -0.3 893,616 + +0.4 893,657 - -0.5 893,886 + SO0865 0.24 +1.2 893,918 - SO0865 0.26 -1.5 893,978 - SO0865 0.30 -0.3 894,048 + SO0865 0.35 -0.9 894,065 + SO0865 0.36 +0.4 894,147 - SO0865 0.41 +0.4 894,157 + SO0865 0.42 +0.4 894,183 + SO0865 0.44 -0.3 894,212 - SO0865 0.46 -0.0 894,223 + SO0865 0.46 -0.6 894,231 - SO0865 0.47 -0.6 894,353 + SO0865 0.55 +1.7 894,353 + SO0865 0.55 +0.5 894,582 + SO0865 0.70 +0.6 894,739 - SO0865 0.81 +0.8 894,825 + SO0865 0.86 +0.5 894,825 + SO0865 0.86 +0.4 894,833 - SO0865 0.87 +1.0 894,833 - -0.3 894,841 - SO0865 0.87 +0.9 894,886 + -0.0 894,917 - +0.0 894,917 - -0.4 894,917 - +1.6 894,917 - -0.3 894,917 - +0.6 894,973 - +0.7 895,044 + +0.3 895,150 + SO0866 0.25 +0.4 895,290 + SO0866 0.58 -0.1 895,313 - SO0866 0.64 +1.0 895,323 - SO0866 0.66 -0.1 895,349 + SO0866 0.72 -2.4 895,511 + -0.1 895,654 + +1.2 895,669 + +1.1 895,860 + +0.0 895,882 + +0.9
Or see this region's nucleotide sequence