Strain Fitness in Shewanella oneidensis MR-1 around SO0680

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0678 and SO0679 are separated by 28 nucleotidesSO0679 and SO0680 are separated by 119 nucleotidesSO0680 and SO0681 overlap by 4 nucleotidesSO0681 and SO0682 are separated by 12 nucleotides SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726 SO0678 SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501 SO0679 SO0680: SO0680 - hypothetical protein (NCBI ptt file), at 696,621 to 700,547 SO0680 SO0681: SO0681 - hypothetical protein (NCBI ptt file), at 700,544 to 700,909 SO0681 SO0682: SO0682 - hypothetical protein (NCBI ptt file), at 700,922 to 703,417 SO0682 Position (kb) 696 697 698 699 700 701Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 695.636 kb on + strand, within SO0678at 695.636 kb on + strand, within SO0678at 695.644 kb on - strand, within SO0678at 695.677 kb on + strand, within SO0678at 695.678 kb on + strand, within SO0678at 695.917 kb on + strand, within SO0679at 695.924 kb on - strand, within SO0679at 695.925 kb on - strand, within SO0679at 696.035 kb on + strand, within SO0679at 696.055 kb on + strand, within SO0679at 696.063 kb on - strand, within SO0679at 696.086 kb on - strand, within SO0679at 696.113 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.179 kb on - strand, within SO0679at 696.196 kb on - strand, within SO0679at 696.216 kb on + strand, within SO0679at 696.242 kb on + strand, within SO0679at 696.255 kb on - strand, within SO0679at 696.260 kb on - strand, within SO0679at 696.295 kb on + strand, within SO0679at 696.303 kb on - strand, within SO0679at 696.394 kb on + strand, within SO0679at 696.535 kb on - strandat 696.712 kb on - strandat 696.753 kb on + strandat 696.837 kb on - strandat 696.872 kb on - strandat 696.897 kb on + strandat 696.900 kb on - strandat 696.921 kb on - strandat 696.928 kb on + strandat 696.929 kb on - strandat 696.977 kb on + strandat 696.978 kb on + strandat 697.023 kb on + strand, within SO0680at 697.036 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.183 kb on + strand, within SO0680at 697.199 kb on + strand, within SO0680at 697.236 kb on - strand, within SO0680at 697.282 kb on + strand, within SO0680at 697.282 kb on + strand, within SO0680at 697.283 kb on - strand, within SO0680at 697.290 kb on - strand, within SO0680at 697.387 kb on + strand, within SO0680at 697.395 kb on - strand, within SO0680at 697.416 kb on - strand, within SO0680at 697.475 kb on - strand, within SO0680at 697.517 kb on + strand, within SO0680at 697.517 kb on + strand, within SO0680at 697.525 kb on - strand, within SO0680at 697.527 kb on + strand, within SO0680at 697.699 kb on - strand, within SO0680at 697.745 kb on - strand, within SO0680at 697.751 kb on - strand, within SO0680at 697.756 kb on - strand, within SO0680at 697.802 kb on + strand, within SO0680at 697.812 kb on + strand, within SO0680at 697.812 kb on + strand, within SO0680at 697.812 kb on - strand, within SO0680at 697.888 kb on + strand, within SO0680at 697.945 kb on - strand, within SO0680at 697.959 kb on + strand, within SO0680at 697.985 kb on + strand, within SO0680at 697.993 kb on - strand, within SO0680at 698.152 kb on + strand, within SO0680at 698.178 kb on + strand, within SO0680at 698.347 kb on + strand, within SO0680at 698.348 kb on - strand, within SO0680at 698.395 kb on - strand, within SO0680at 698.397 kb on + strand, within SO0680at 698.397 kb on + strand, within SO0680at 698.397 kb on + strand, within SO0680at 698.401 kb on - strand, within SO0680at 698.405 kb on - strand, within SO0680at 698.426 kb on + strand, within SO0680at 698.535 kb on - strand, within SO0680at 698.559 kb on + strand, within SO0680at 698.567 kb on - strand, within SO0680at 698.590 kb on - strand, within SO0680at 698.609 kb on + strand, within SO0680at 698.609 kb on + strand, within SO0680at 698.677 kb on + strand, within SO0680at 698.730 kb on + strand, within SO0680at 698.733 kb on - strand, within SO0680at 698.738 kb on - strand, within SO0680at 698.750 kb on + strand, within SO0680at 698.750 kb on + strand, within SO0680at 698.758 kb on - strand, within SO0680at 698.788 kb on + strand, within SO0680at 698.811 kb on + strand, within SO0680at 698.862 kb on - strand, within SO0680at 698.934 kb on + strand, within SO0680at 699.151 kb on + strand, within SO0680at 699.151 kb on + strand, within SO0680at 699.151 kb on + strand, within SO0680at 699.151 kb on + strand, within SO0680at 699.151 kb on + strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.159 kb on - strand, within SO0680at 699.192 kb on + strand, within SO0680at 699.219 kb on - strand, within SO0680at 699.248 kb on - strand, within SO0680at 699.250 kb on - strand, within SO0680at 699.294 kb on + strand, within SO0680at 699.312 kb on - strand, within SO0680at 699.431 kb on + strand, within SO0680at 699.465 kb on + strand, within SO0680at 699.593 kb on + strand, within SO0680at 699.599 kb on - strand, within SO0680at 699.623 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.713 kb on + strand, within SO0680at 699.714 kb on + strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.721 kb on - strand, within SO0680at 699.747 kb on + strand, within SO0680at 699.747 kb on + strand, within SO0680at 699.826 kb on - strand, within SO0680at 699.841 kb on + strand, within SO0680at 699.841 kb on + strand, within SO0680at 699.924 kb on - strand, within SO0680at 700.016 kb on - strand, within SO0680at 700.065 kb on - strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.096 kb on + strand, within SO0680at 700.104 kb on + strand, within SO0680at 700.163 kb on + strandat 700.182 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.370 kb on + strandat 700.378 kb on - strandat 700.378 kb on - strandat 700.389 kb on - strandat 700.451 kb on + strandat 700.503 kb on - strandat 700.527 kb on - strandat 700.527 kb on - strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.551 kb on + strandat 700.560 kb on - strandat 700.607 kb on + strand, within SO0681at 700.607 kb on + strand, within SO0681at 700.615 kb on - strand, within SO0681at 700.649 kb on - strand, within SO0681at 700.696 kb on - strand, within SO0681at 700.720 kb on + strand, within SO0681at 700.799 kb on - strand, within SO0681at 700.801 kb on + strand, within SO0681at 700.862 kb on - strand, within SO0681at 700.904 kb on + strandat 700.913 kb on - strandat 700.979 kb on - strandat 700.979 kb on - strandat 701.017 kb on + strandat 701.017 kb on + strandat 701.030 kb on - strandat 701.034 kb on - strandat 701.142 kb on + strandat 701.142 kb on + strandat 701.150 kb on - strandat 701.150 kb on - strandat 701.161 kb on + strandat 701.285 kb on - strand, within SO0682at 701.355 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.372 kb on - strand, within SO0682at 701.405 kb on - strand, within SO0682at 701.429 kb on - strand, within SO0682

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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695,636 + SO0678 0.80 +0.6
695,636 + SO0678 0.80 -0.9
695,644 - SO0678 0.81 +0.5
695,677 + SO0678 0.89 +0.6
695,678 + SO0678 0.89 -0.4
695,917 + SO0679 0.22 -0.3
695,924 - SO0679 0.23 +0.3
695,925 - SO0679 0.23 +0.2
696,035 + SO0679 0.37 -0.1
696,055 + SO0679 0.40 +0.3
696,063 - SO0679 0.41 -1.7
696,086 - SO0679 0.44 +0.1
696,113 + SO0679 0.48 -2.8
696,146 + SO0679 0.52 -0.9
696,146 + SO0679 0.52 +0.6
696,146 + SO0679 0.52 +0.7
696,146 + SO0679 0.52 -0.7
696,146 + SO0679 0.52 -0.0
696,146 + SO0679 0.52 +0.5
696,146 + SO0679 0.52 +0.2
696,146 + SO0679 0.52 -1.2
696,146 + SO0679 0.52 +0.5
696,146 + SO0679 0.52 -0.9
696,146 + SO0679 0.52 -0.0
696,154 - SO0679 0.53 -0.5
696,154 - SO0679 0.53 +0.5
696,154 - SO0679 0.53 -1.4
696,154 - SO0679 0.53 +0.6
696,154 - SO0679 0.53 -0.3
696,154 - SO0679 0.53 -0.5
696,154 - SO0679 0.53 +0.4
696,154 - SO0679 0.53 +0.5
696,154 - SO0679 0.53 -0.1
696,154 - SO0679 0.53 -0.3
696,154 - SO0679 0.53 +0.2
696,154 - SO0679 0.53 -1.3
696,154 - SO0679 0.53 -0.6
696,154 - SO0679 0.53 -0.5
696,154 - SO0679 0.53 -2.4
696,179 - SO0679 0.57 -0.4
696,196 - SO0679 0.59 +0.0
696,216 + SO0679 0.62 +0.4
696,242 + SO0679 0.65 +1.0
696,255 - SO0679 0.67 -0.6
696,260 - SO0679 0.68 -1.1
696,295 + SO0679 0.72 -0.4
696,303 - SO0679 0.73 +0.3
696,394 + SO0679 0.86 -3.2
696,535 - +0.8
696,712 - +0.6
696,753 + +0.8
696,837 - +1.3
696,872 - +0.7
696,897 + -2.2
696,900 - +0.6
696,921 - +0.4
696,928 + +0.3
696,929 - -0.1
696,977 + -0.3
696,978 + +0.2
697,023 + SO0680 0.10 -1.2
697,036 + SO0680 0.11 -0.4
697,108 + SO0680 0.12 +0.5
697,108 + SO0680 0.12 -0.7
697,108 + SO0680 0.12 +0.3
697,108 + SO0680 0.12 +0.5
697,108 + SO0680 0.12 -0.1
697,108 + SO0680 0.12 -0.9
697,108 + SO0680 0.12 +0.3
697,108 + SO0680 0.12 -0.2
697,108 + SO0680 0.12 +0.7
697,108 + SO0680 0.12 +0.7
697,116 - SO0680 0.13 -0.5
697,116 - SO0680 0.13 +0.6
697,116 - SO0680 0.13 +1.1
697,183 + SO0680 0.14 -0.6
697,199 + SO0680 0.15 -0.1
697,236 - SO0680 0.16 +0.3
697,282 + SO0680 0.17 +0.0
697,282 + SO0680 0.17 +1.1
697,283 - SO0680 0.17 +0.6
697,290 - SO0680 0.17 +0.0
697,387 + SO0680 0.20 +0.9
697,395 - SO0680 0.20 +0.4
697,416 - SO0680 0.20 +1.2
697,475 - SO0680 0.22 +0.1
697,517 + SO0680 0.23 +0.6
697,517 + SO0680 0.23 +0.2
697,525 - SO0680 0.23 +0.3
697,527 + SO0680 0.23 +0.4
697,699 - SO0680 0.27 +0.4
697,745 - SO0680 0.29 -1.8
697,751 - SO0680 0.29 -0.8
697,756 - SO0680 0.29 -2.7
697,802 + SO0680 0.30 +0.4
697,812 + SO0680 0.30 -1.1
697,812 + SO0680 0.30 -0.5
697,812 - SO0680 0.30 +1.2
697,888 + SO0680 0.32 +0.2
697,945 - SO0680 0.34 -1.8
697,959 + SO0680 0.34 -0.7
697,985 + SO0680 0.35 -0.2
697,993 - SO0680 0.35 +0.0
698,152 + SO0680 0.39 +0.0
698,178 + SO0680 0.40 +0.0
698,347 + SO0680 0.44 -0.1
698,348 - SO0680 0.44 -0.1
698,395 - SO0680 0.45 +0.3
698,397 + SO0680 0.45 +0.6
698,397 + SO0680 0.45 +0.0
698,397 + SO0680 0.45 +2.6
698,401 - SO0680 0.45 -0.8
698,405 - SO0680 0.45 +1.0
698,426 + SO0680 0.46 +1.0
698,535 - SO0680 0.49 +0.4
698,559 + SO0680 0.49 +0.4
698,567 - SO0680 0.50 +0.9
698,590 - SO0680 0.50 +0.2
698,609 + SO0680 0.51 -1.2
698,609 + SO0680 0.51 +0.2
698,677 + SO0680 0.52 -0.4
698,730 + SO0680 0.54 -1.0
698,733 - SO0680 0.54 +0.7
698,738 - SO0680 0.54 -1.5
698,750 + SO0680 0.54 +0.2
698,750 + SO0680 0.54 +0.8
698,758 - SO0680 0.54 +0.9
698,788 + SO0680 0.55 +0.1
698,811 + SO0680 0.56 +0.8
698,862 - SO0680 0.57 -0.9
698,934 + SO0680 0.59 +0.3
699,151 + SO0680 0.64 +0.3
699,151 + SO0680 0.64 +0.0
699,151 + SO0680 0.64 -0.6
699,151 + SO0680 0.64 +0.7
699,151 + SO0680 0.64 +0.3
699,159 - SO0680 0.65 -0.6
699,159 - SO0680 0.65 +0.0
699,159 - SO0680 0.65 +0.2
699,159 - SO0680 0.65 +0.3
699,159 - SO0680 0.65 -0.2
699,159 - SO0680 0.65 -0.2
699,159 - SO0680 0.65 -1.0
699,159 - SO0680 0.65 +0.5
699,159 - SO0680 0.65 +0.4
699,192 + SO0680 0.65 -0.3
699,219 - SO0680 0.66 -0.6
699,248 - SO0680 0.67 -0.9
699,250 - SO0680 0.67 +0.9
699,294 + SO0680 0.68 -0.4
699,312 - SO0680 0.69 -0.4
699,431 + SO0680 0.72 -0.0
699,465 + SO0680 0.72 -1.5
699,593 + SO0680 0.76 +0.4
699,599 - SO0680 0.76 +0.4
699,623 + SO0680 0.76 +0.5
699,713 + SO0680 0.79 -0.1
699,713 + SO0680 0.79 +0.1
699,713 + SO0680 0.79 +0.4
699,713 + SO0680 0.79 -0.7
699,713 + SO0680 0.79 -0.0
699,713 + SO0680 0.79 -0.1
699,714 + SO0680 0.79 +1.4
699,721 - SO0680 0.79 -1.0
699,721 - SO0680 0.79 +0.1
699,721 - SO0680 0.79 +0.6
699,721 - SO0680 0.79 +0.1
699,721 - SO0680 0.79 +0.3
699,747 + SO0680 0.80 -0.5
699,747 + SO0680 0.80 -2.6
699,826 - SO0680 0.82 -0.2
699,841 + SO0680 0.82 -0.5
699,841 + SO0680 0.82 -0.5
699,924 - SO0680 0.84 -1.1
700,016 - SO0680 0.86 +0.4
700,065 - SO0680 0.88 -0.4
700,086 + SO0680 0.88 +0.4
700,086 + SO0680 0.88 -0.1
700,086 + SO0680 0.88 +0.5
700,094 - SO0680 0.88 +0.5
700,094 - SO0680 0.88 +1.0
700,094 - SO0680 0.88 -0.0
700,096 + SO0680 0.88 +0.2
700,104 + SO0680 0.89 +0.7
700,163 + +1.7
700,182 - -0.2
700,195 - -0.1
700,195 - +0.7
700,195 - -0.8
700,370 + +0.4
700,378 - -4.2
700,378 - -0.6
700,389 - -0.9
700,451 + -0.7
700,503 - +0.3
700,527 - +0.0
700,527 - -0.6
700,529 + +0.0
700,529 + +0.2
700,529 + -0.3
700,537 - +0.4
700,537 - +0.4
700,537 - -0.9
700,537 - -0.1
700,537 - -2.3
700,537 - +0.7
700,551 + +0.6
700,560 - +0.0
700,607 + SO0681 0.17 -0.0
700,607 + SO0681 0.17 -0.2
700,615 - SO0681 0.19 +0.3
700,649 - SO0681 0.29 +0.1
700,696 - SO0681 0.42 -1.6
700,720 + SO0681 0.48 -0.4
700,799 - SO0681 0.70 +0.4
700,801 + SO0681 0.70 -0.0
700,862 - SO0681 0.87 +0.6
700,904 + -0.4
700,913 - +0.4
700,979 - +0.7
700,979 - +0.3
701,017 + -1.6
701,017 + +0.1
701,030 - +0.7
701,034 - -1.0
701,142 + -0.2
701,142 + -0.0
701,150 - +0.2
701,150 - -0.4
701,161 + -1.2
701,285 - SO0682 0.15 -0.0
701,355 + SO0682 0.17 -0.5
701,364 + SO0682 0.18 -0.7
701,364 + SO0682 0.18 -0.8
701,372 - SO0682 0.18 -1.3
701,405 - SO0682 0.19 -0.0
701,429 - SO0682 0.20 -1.0

Or see this region's nucleotide sequence