Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpsA and SO0054 are separated by 349 nucleotides SO0054 and SO0055 are separated by 222 nucleotides
SO0053: gpsA - glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file), at 58,583 to 59,599
gpsA
SO0054: SO0054 - conserved hypothetical protein TIGR00275 (NCBI ptt file), at 59,949 to 61,139
SO0054
SO0055: SO0055 - conserved domain protein (NCBI ptt file), at 61,362 to 63,041
SO0055
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 59.635 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.796 kb on + strand at 59.796 kb on + strand at 59.804 kb on - strand at 59.804 kb on - strand at 59.804 kb on - strand at 59.883 kb on - strand at 59.945 kb on + strand at 59.945 kb on + strand at 59.953 kb on - strand at 59.961 kb on - strand at 59.961 kb on - strand at 59.997 kb on + strand at 59.997 kb on + strand at 60.005 kb on - strand at 60.005 kb on - strand at 60.005 kb on - strand at 60.010 kb on - strand at 60.039 kb on - strand at 60.039 kb on - strand at 60.116 kb on + strand, within SO0054 at 60.123 kb on - strand, within SO0054 at 60.124 kb on - strand, within SO0054 at 60.124 kb on - strand, within SO0054 at 60.223 kb on + strand, within SO0054 at 60.231 kb on - strand, within SO0054 at 60.231 kb on - strand, within SO0054 at 60.252 kb on - strand, within SO0054 at 60.281 kb on - strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.325 kb on + strand, within SO0054 at 60.333 kb on - strand, within SO0054 at 60.333 kb on - strand, within SO0054 at 60.333 kb on - strand, within SO0054 at 60.333 kb on - strand, within SO0054 at 60.333 kb on - strand, within SO0054 at 60.376 kb on + strand, within SO0054 at 60.381 kb on + strand, within SO0054 at 60.384 kb on - strand, within SO0054 at 60.467 kb on + strand, within SO0054 at 60.475 kb on + strand, within SO0054 at 60.475 kb on - strand, within SO0054 at 60.499 kb on + strand, within SO0054 at 60.534 kb on - strand, within SO0054 at 60.596 kb on - strand, within SO0054 at 60.636 kb on + strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.644 kb on - strand, within SO0054 at 60.657 kb on + strand, within SO0054 at 60.657 kb on + strand, within SO0054 at 60.665 kb on - strand, within SO0054 at 60.694 kb on + strand, within SO0054 at 60.794 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on + strand, within SO0054 at 60.802 kb on - strand, within SO0054 at 60.802 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.810 kb on - strand, within SO0054 at 60.815 kb on - strand, within SO0054 at 60.896 kb on + strand, within SO0054 at 60.920 kb on + strand, within SO0054 at 60.930 kb on + strand, within SO0054 at 60.933 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.938 kb on - strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.991 kb on + strand, within SO0054 at 60.999 kb on - strand, within SO0054 at 60.999 kb on - strand, within SO0054 at 61.083 kb on - strand at 61.107 kb on - strand at 61.116 kb on - strand at 61.134 kb on + strand at 61.142 kb on - strand at 61.149 kb on + strand at 61.154 kb on + strand at 61.154 kb on + strand at 61.157 kb on - strand at 61.157 kb on - strand at 61.204 kb on + strand at 61.209 kb on + strand at 61.349 kb on + strand at 61.357 kb on - strand at 61.357 kb on - strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.360 kb on + strand at 61.367 kb on - strand at 61.367 kb on - strand at 61.367 kb on - strand at 61.380 kb on + strand at 61.386 kb on - strand at 61.445 kb on - strand at 61.522 kb on + strand at 61.525 kb on - strand at 61.525 kb on - strand at 61.539 kb on + strand, within SO0055 at 61.547 kb on - strand, within SO0055 at 61.564 kb on + strand, within SO0055 at 61.577 kb on - strand, within SO0055 at 61.585 kb on + strand, within SO0055 at 61.593 kb on - strand, within SO0055 at 61.632 kb on + strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.640 kb on - strand, within SO0055 at 61.678 kb on + strand, within SO0055 at 61.686 kb on + strand, within SO0055 at 61.696 kb on + strand, within SO0055 at 61.696 kb on + strand, within SO0055 at 61.704 kb on - strand, within SO0055 at 61.726 kb on - strand, within SO0055 at 61.735 kb on - strand, within SO0055 at 61.746 kb on - strand, within SO0055 at 61.755 kb on + strand, within SO0055 at 61.784 kb on + strand, within SO0055 at 61.784 kb on - strand, within SO0055 at 61.804 kb on - strand, within SO0055 at 61.819 kb on + strand, within SO0055 at 61.819 kb on + strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.869 kb on - strand, within SO0055 at 61.878 kb on + strand, within SO0055 at 61.916 kb on - strand, within SO0055 at 62.082 kb on - strand, within SO0055 at 62.094 kb on - strand, within SO0055 at 62.094 kb on - strand, within SO0055
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 59,635 + +0.1 59,709 + -0.6 59,709 + -0.2 59,709 + +1.0 59,796 + +0.5 59,796 + -0.2 59,804 - -1.4 59,804 - +0.1 59,804 - -1.2 59,883 - +0.5 59,945 + -0.5 59,945 + -0.3 59,953 - +0.5 59,961 - +0.4 59,961 - +0.5 59,997 + -0.1 59,997 + -0.0 60,005 - -0.1 60,005 - +1.0 60,005 - -0.2 60,010 - +0.2 60,039 - -1.0 60,039 - +0.8 60,116 + SO0054 0.14 -0.8 60,123 - SO0054 0.15 +0.3 60,124 - SO0054 0.15 +1.3 60,124 - SO0054 0.15 -0.1 60,223 + SO0054 0.23 +0.1 60,231 - SO0054 0.24 +0.5 60,231 - SO0054 0.24 -1.3 60,252 - SO0054 0.25 +0.2 60,281 - SO0054 0.28 +0.1 60,325 + SO0054 0.32 -0.5 60,325 + SO0054 0.32 -0.1 60,325 + SO0054 0.32 +0.6 60,325 + SO0054 0.32 -0.2 60,325 + SO0054 0.32 +0.0 60,325 + SO0054 0.32 +1.1 60,333 - SO0054 0.32 +0.1 60,333 - SO0054 0.32 -0.3 60,333 - SO0054 0.32 -1.5 60,333 - SO0054 0.32 -0.1 60,333 - SO0054 0.32 +0.4 60,376 + SO0054 0.36 +0.2 60,381 + SO0054 0.36 -4.2 60,384 - SO0054 0.37 +0.2 60,467 + SO0054 0.43 -0.1 60,475 + SO0054 0.44 -0.7 60,475 - SO0054 0.44 -0.7 60,499 + SO0054 0.46 -0.6 60,534 - SO0054 0.49 -0.1 60,596 - SO0054 0.54 -0.2 60,636 + SO0054 0.58 -0.7 60,644 - SO0054 0.58 -0.9 60,644 - SO0054 0.58 -0.0 60,644 - SO0054 0.58 +0.1 60,657 + SO0054 0.59 +0.1 60,657 + SO0054 0.59 -0.6 60,665 - SO0054 0.60 -0.2 60,694 + SO0054 0.63 -0.2 60,794 + SO0054 0.71 -0.2 60,802 + SO0054 0.72 -0.8 60,802 + SO0054 0.72 -0.4 60,802 + SO0054 0.72 -2.4 60,802 + SO0054 0.72 +0.0 60,802 - SO0054 0.72 -0.0 60,802 - SO0054 0.72 +0.4 60,810 - SO0054 0.72 -0.7 60,810 - SO0054 0.72 +0.0 60,810 - SO0054 0.72 -0.3 60,815 - SO0054 0.73 +0.3 60,896 + SO0054 0.80 -2.1 60,920 + SO0054 0.82 -1.2 60,930 + SO0054 0.82 +0.5 60,933 - SO0054 0.83 -0.5 60,938 - SO0054 0.83 +0.2 60,938 - SO0054 0.83 -0.1 60,938 - SO0054 0.83 -0.3 60,991 + SO0054 0.87 -0.6 60,991 + SO0054 0.87 -0.5 60,991 + SO0054 0.87 +0.4 60,991 + SO0054 0.87 -0.3 60,991 + SO0054 0.87 -1.0 60,999 - SO0054 0.88 -0.1 60,999 - SO0054 0.88 +0.8 61,083 - +0.1 61,107 - -0.1 61,116 - -0.0 61,134 + +0.5 61,142 - -0.1 61,149 + +0.2 61,154 + -1.1 61,154 + -0.5 61,157 - +0.7 61,157 - +0.5 61,204 + -0.6 61,209 + -0.1 61,349 + +1.2 61,357 - -0.9 61,357 - -1.0 61,359 + +0.3 61,359 + +0.2 61,359 + +0.4 61,359 + -0.5 61,359 + +0.2 61,359 + -0.6 61,360 + -0.4 61,367 - -0.8 61,367 - -0.9 61,367 - +0.5 61,380 + -1.2 61,386 - +0.5 61,445 - -0.8 61,522 + -0.2 61,525 - -0.6 61,525 - -1.0 61,539 + SO0055 0.11 -1.6 61,547 - SO0055 0.11 -0.0 61,564 + SO0055 0.12 +1.3 61,577 - SO0055 0.13 -0.2 61,585 + SO0055 0.13 -0.1 61,593 - SO0055 0.14 -0.2 61,632 + SO0055 0.16 +0.2 61,640 - SO0055 0.17 +0.5 61,640 - SO0055 0.17 +0.2 61,640 - SO0055 0.17 +0.4 61,678 + SO0055 0.19 +1.3 61,686 + SO0055 0.19 -1.3 61,696 + SO0055 0.20 -0.2 61,696 + SO0055 0.20 -0.1 61,704 - SO0055 0.20 -0.6 61,726 - SO0055 0.22 +0.0 61,735 - SO0055 0.22 +0.2 61,746 - SO0055 0.23 -0.7 61,755 + SO0055 0.23 -0.9 61,784 + SO0055 0.25 +0.5 61,784 - SO0055 0.25 -1.0 61,804 - SO0055 0.26 +0.1 61,819 + SO0055 0.27 -0.4 61,819 + SO0055 0.27 -1.5 61,869 - SO0055 0.30 +0.4 61,869 - SO0055 0.30 -1.1 61,869 - SO0055 0.30 +0.1 61,869 - SO0055 0.30 -0.9 61,878 + SO0055 0.31 +0.5 61,916 - SO0055 0.33 +1.3 62,082 - SO0055 0.43 +0.9 62,094 - SO0055 0.44 -0.1 62,094 - SO0055 0.44 -1.0
Or see this region's nucleotide sequence