Strain Fitness in Shewanella oneidensis MR-1 around SO_3068
Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,184,771 | - | -0.3 | |||
3,184,771 | - | -1.2 | |||
3,184,771 | - | -0.2 | |||
3,184,805 | - | SO_3068 | 0.12 | +0.3 | |
3,184,888 | - | SO_3068 | 0.23 | -0.1 | |
3,184,982 | - | SO_3068 | 0.35 | +0.6 | |
3,185,164 | + | SO_3068 | 0.58 | -0.6 | |
3,185,191 | - | SO_3068 | 0.61 | -0.7 | |
3,185,204 | - | SO_3068 | 0.63 | +0.1 | |
3,185,410 | + | SO_3068 | 0.89 | +0.4 | |
3,185,426 | + | +1.4 | |||
3,185,428 | - | -1.3 | |||
3,185,432 | + | -0.8 | |||
3,185,830 | - | -0.3 | |||
3,185,840 | + | -2.1 | |||
3,185,840 | + | -0.3 | |||
3,185,842 | - | -0.0 | |||
3,185,845 | + | -0.9 | |||
3,185,967 | + | SO3069 | 0.11 | -0.5 | |
3,186,003 | - | SO3069 | 0.12 | -1.5 | |
3,186,142 | + | SO3069 | 0.16 | +1.0 | |
3,186,302 | + | SO3069 | 0.21 | -0.8 | |
3,186,302 | + | SO3069 | 0.21 | -1.3 | |
3,186,476 | + | SO3069 | 0.26 | -1.8 | |
3,186,477 | - | SO3069 | 0.26 | -3.3 |
Or see this region's nucleotide sequence