Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02150

Experiment: m.b. Zinc 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotidesPGA1_262p02140 and PGA1_262p02150 are separated by 273 nucleotidesPGA1_262p02150 and PGA1_262p02160 are separated by 94 nucleotides PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741 _262p02130 PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142 _262p02140 PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815 _262p02150 PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914 _262p02160 Position (kb) 231 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 230.477 kb on - strand, within PGA1_262p02130at 230.533 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.597 kb on - strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.630 kb on - strand, within PGA1_262p02130at 230.640 kb on + strand, within PGA1_262p02130at 230.645 kb on - strand, within PGA1_262p02130at 230.655 kb on - strand, within PGA1_262p02130at 230.672 kb on + strand, within PGA1_262p02130at 230.865 kb on - strand, within PGA1_262p02140at 230.875 kb on + strand, within PGA1_262p02140at 230.883 kb on - strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.936 kb on - strand, within PGA1_262p02140at 230.952 kb on + strand, within PGA1_262p02140at 230.979 kb on - strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.989 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.992 kb on + strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.067 kb on - strand, within PGA1_262p02140at 231.075 kb on + strand, within PGA1_262p02140at 231.213 kb on + strandat 231.245 kb on - strandat 231.250 kb on + strandat 231.252 kb on + strandat 231.272 kb on + strandat 231.279 kb on - strandat 231.282 kb on - strandat 231.371 kb on - strandat 231.371 kb on - strandat 231.381 kb on + strandat 231.389 kb on - strandat 231.402 kb on + strandat 231.402 kb on + strandat 231.455 kb on + strandat 231.458 kb on - strandat 231.478 kb on - strandat 231.505 kb on + strandat 231.518 kb on - strandat 231.570 kb on - strandat 231.585 kb on - strandat 231.632 kb on - strandat 231.632 kb on - strandat 231.638 kb on - strandat 231.643 kb on + strandat 231.669 kb on + strand, within PGA1_262p02150at 231.681 kb on + strand, within PGA1_262p02150at 231.691 kb on + strand, within PGA1_262p02150at 231.699 kb on - strand, within PGA1_262p02150at 231.699 kb on - strand, within PGA1_262p02150at 231.724 kb on + strand, within PGA1_262p02150at 231.734 kb on - strand, within PGA1_262p02150at 231.800 kb on + strand, within PGA1_262p02150at 231.808 kb on - strand, within PGA1_262p02150at 231.817 kb on + strand, within PGA1_262p02150at 231.825 kb on - strand, within PGA1_262p02150at 231.842 kb on + strand, within PGA1_262p02150at 231.850 kb on - strand, within PGA1_262p02150at 231.882 kb on - strand, within PGA1_262p02150at 231.898 kb on - strand, within PGA1_262p02150at 231.927 kb on + strand, within PGA1_262p02150at 231.935 kb on - strand, within PGA1_262p02150at 231.935 kb on - strand, within PGA1_262p02150at 231.937 kb on + strand, within PGA1_262p02150at 231.982 kb on - strand, within PGA1_262p02150at 232.181 kb on + strand, within PGA1_262p02150at 232.241 kb on - strand, within PGA1_262p02150at 232.333 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.413 kb on + strand, within PGA1_262p02150at 232.639 kb on + strand, within PGA1_262p02150at 232.639 kb on - strand, within PGA1_262p02150at 232.682 kb on - strand, within PGA1_262p02150at 232.682 kb on - strand, within PGA1_262p02150at 232.729 kb on + strand, within PGA1_262p02150at 232.729 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.737 kb on - strand, within PGA1_262p02150at 232.739 kb on + strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.851 kb on - strand, within PGA1_262p02150at 233.928 kb on - strandat 233.967 kb on - strandat 234.061 kb on - strand, within PGA1_262p02160at 234.065 kb on - strand, within PGA1_262p02160at 234.072 kb on + strand, within PGA1_262p02160at 234.126 kb on + strand, within PGA1_262p02160at 234.151 kb on - strand, within PGA1_262p02160at 234.339 kb on + strand, within PGA1_262p02160at 234.401 kb on - strand, within PGA1_262p02160at 234.418 kb on - strand, within PGA1_262p02160at 234.428 kb on - strand, within PGA1_262p02160at 234.515 kb on + strand, within PGA1_262p02160at 234.523 kb on - strand, within PGA1_262p02160at 234.590 kb on + strand, within PGA1_262p02160at 234.590 kb on + strand, within PGA1_262p02160at 234.599 kb on - strand, within PGA1_262p02160at 234.609 kb on - strand, within PGA1_262p02160at 234.623 kb on + strand, within PGA1_262p02160at 234.623 kb on + strand, within PGA1_262p02160at 234.631 kb on - strand, within PGA1_262p02160at 234.684 kb on + strand, within PGA1_262p02160at 234.684 kb on + strand, within PGA1_262p02160at 234.692 kb on - strand, within PGA1_262p02160at 234.692 kb on - strand, within PGA1_262p02160at 234.732 kb on + strand, within PGA1_262p02160at 234.735 kb on - strand, within PGA1_262p02160at 234.740 kb on - strand, within PGA1_262p02160at 234.752 kb on - strand, within PGA1_262p02160at 234.785 kb on - strand, within PGA1_262p02160at 234.785 kb on - strand, within PGA1_262p02160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM
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230,477 - PGA1_262p02130 0.29 -0.0
230,533 + PGA1_262p02130 0.44 +0.4
230,552 + PGA1_262p02130 0.49 +1.1
230,552 + PGA1_262p02130 0.49 +1.2
230,560 - PGA1_262p02130 0.51 +1.1
230,560 - PGA1_262p02130 0.51 -1.0
230,560 - PGA1_262p02130 0.51 +0.1
230,560 - PGA1_262p02130 0.51 +0.2
230,560 - PGA1_262p02130 0.51 -0.3
230,597 - PGA1_262p02130 0.61 +0.6
230,622 + PGA1_262p02130 0.68 +0.5
230,622 + PGA1_262p02130 0.68 -1.0
230,630 - PGA1_262p02130 0.70 +0.5
230,640 + PGA1_262p02130 0.73 +1.2
230,645 - PGA1_262p02130 0.74 +0.6
230,655 - PGA1_262p02130 0.77 -0.2
230,672 + PGA1_262p02130 0.81 +0.6
230,865 - PGA1_262p02140 0.31 -2.0
230,875 + PGA1_262p02140 0.34 -0.9
230,883 - PGA1_262p02140 0.36 +0.8
230,928 + PGA1_262p02140 0.47 +0.7
230,928 + PGA1_262p02140 0.47 +0.5
230,928 + PGA1_262p02140 0.47 +1.0
230,936 - PGA1_262p02140 0.49 +0.1
230,952 + PGA1_262p02140 0.53 -0.0
230,979 - PGA1_262p02140 0.60 -0.2
230,982 + PGA1_262p02140 0.60 -0.0
230,982 + PGA1_262p02140 0.60 +2.1
230,982 + PGA1_262p02140 0.60 +0.5
230,982 + PGA1_262p02140 0.60 -0.5
230,989 - PGA1_262p02140 0.62 -2.5
230,990 - PGA1_262p02140 0.62 +0.4
230,990 - PGA1_262p02140 0.62 +1.7
230,990 - PGA1_262p02140 0.62 +0.1
230,990 - PGA1_262p02140 0.62 -0.1
230,990 - PGA1_262p02140 0.62 -2.0
230,990 - PGA1_262p02140 0.62 +1.0
230,990 - PGA1_262p02140 0.62 +1.3
230,992 + PGA1_262p02140 0.63 +0.8
231,000 - PGA1_262p02140 0.65 -0.5
231,000 - PGA1_262p02140 0.65 -0.9
231,000 - PGA1_262p02140 0.65 -1.3
231,000 - PGA1_262p02140 0.65 +1.7
231,000 - PGA1_262p02140 0.65 +0.3
231,000 - PGA1_262p02140 0.65 +2.5
231,000 - PGA1_262p02140 0.65 +1.0
231,000 - PGA1_262p02140 0.65 +1.0
231,067 - PGA1_262p02140 0.81 -0.3
231,075 + PGA1_262p02140 0.83 +0.4
231,213 + -1.1
231,245 - -0.5
231,250 + +2.4
231,252 + +1.6
231,272 + +0.7
231,279 - -1.4
231,282 - +0.8
231,371 - -1.0
231,371 - -0.8
231,381 + -0.0
231,389 - +2.6
231,402 + -0.6
231,402 + -1.4
231,455 + -0.8
231,458 - +0.1
231,478 - -0.6
231,505 + +0.1
231,518 - -0.0
231,570 - -0.6
231,585 - +0.2
231,632 - -1.6
231,632 - +1.0
231,638 - -0.8
231,643 + +0.6
231,669 + PGA1_262p02150 0.11 +0.7
231,681 + PGA1_262p02150 0.11 -0.0
231,691 + PGA1_262p02150 0.11 +0.2
231,699 - PGA1_262p02150 0.12 -1.0
231,699 - PGA1_262p02150 0.12 +0.2
231,724 + PGA1_262p02150 0.13 +1.4
231,734 - PGA1_262p02150 0.13 -0.0
231,800 + PGA1_262p02150 0.16 +1.0
231,808 - PGA1_262p02150 0.16 +0.4
231,817 + PGA1_262p02150 0.17 +0.6
231,825 - PGA1_262p02150 0.17 -0.0
231,842 + PGA1_262p02150 0.18 -1.0
231,850 - PGA1_262p02150 0.18 -1.0
231,882 - PGA1_262p02150 0.19 -3.4
231,898 - PGA1_262p02150 0.20 -0.6
231,927 + PGA1_262p02150 0.21 -0.3
231,935 - PGA1_262p02150 0.22 +0.7
231,935 - PGA1_262p02150 0.22 -0.4
231,937 + PGA1_262p02150 0.22 +0.8
231,982 - PGA1_262p02150 0.24 +0.7
232,181 + PGA1_262p02150 0.32 +1.1
232,241 - PGA1_262p02150 0.34 +1.2
232,333 + PGA1_262p02150 0.38 -0.6
232,403 + PGA1_262p02150 0.41 -3.5
232,403 + PGA1_262p02150 0.41 -0.3
232,403 + PGA1_262p02150 0.41 -0.3
232,403 + PGA1_262p02150 0.41 +0.4
232,403 + PGA1_262p02150 0.41 +1.3
232,403 + PGA1_262p02150 0.41 -0.8
232,403 + PGA1_262p02150 0.41 +0.7
232,403 + PGA1_262p02150 0.41 +0.5
232,403 + PGA1_262p02150 0.41 +0.4
232,403 + PGA1_262p02150 0.41 -1.6
232,403 + PGA1_262p02150 0.41 +0.8
232,411 - PGA1_262p02150 0.41 +0.2
232,411 - PGA1_262p02150 0.41 +1.7
232,411 - PGA1_262p02150 0.41 -0.3
232,411 - PGA1_262p02150 0.41 +0.7
232,411 - PGA1_262p02150 0.41 -1.6
232,411 - PGA1_262p02150 0.41 +0.8
232,411 - PGA1_262p02150 0.41 +1.0
232,411 - PGA1_262p02150 0.41 -2.4
232,411 - PGA1_262p02150 0.41 +0.4
232,411 - PGA1_262p02150 0.41 +0.2
232,411 - PGA1_262p02150 0.41 -1.5
232,413 + PGA1_262p02150 0.42 +2.6
232,639 + PGA1_262p02150 0.51 -0.0
232,639 - PGA1_262p02150 0.51 +0.6
232,682 - PGA1_262p02150 0.53 -0.7
232,682 - PGA1_262p02150 0.53 -1.0
232,729 + PGA1_262p02150 0.55 +1.0
232,729 + PGA1_262p02150 0.55 +0.2
232,734 + PGA1_262p02150 0.55 +0.7
232,734 + PGA1_262p02150 0.55 +1.6
232,734 + PGA1_262p02150 0.55 +1.9
232,734 + PGA1_262p02150 0.55 -1.3
232,737 - PGA1_262p02150 0.55 -0.5
232,739 + PGA1_262p02150 0.55 +1.6
232,742 - PGA1_262p02150 0.55 -0.5
232,742 - PGA1_262p02150 0.55 +1.6
232,742 - PGA1_262p02150 0.55 -0.0
232,742 - PGA1_262p02150 0.55 +1.1
232,851 - PGA1_262p02150 0.60 +1.4
233,928 - +1.1
233,967 - -1.4
234,061 - PGA1_262p02160 0.15 -0.0
234,065 - PGA1_262p02160 0.15 -0.8
234,072 + PGA1_262p02160 0.16 -0.6
234,126 + PGA1_262p02160 0.21 -0.8
234,151 - PGA1_262p02160 0.24 -0.2
234,339 + PGA1_262p02160 0.43 -1.0
234,401 - PGA1_262p02160 0.49 -1.0
234,418 - PGA1_262p02160 0.51 +0.7
234,428 - PGA1_262p02160 0.52 -0.8
234,515 + PGA1_262p02160 0.60 -1.5
234,523 - PGA1_262p02160 0.61 +0.5
234,590 + PGA1_262p02160 0.68 -0.3
234,590 + PGA1_262p02160 0.68 -0.9
234,599 - PGA1_262p02160 0.69 -1.2
234,609 - PGA1_262p02160 0.70 -0.8
234,623 + PGA1_262p02160 0.71 +1.3
234,623 + PGA1_262p02160 0.71 -0.0
234,631 - PGA1_262p02160 0.72 +0.5
234,684 + PGA1_262p02160 0.77 +0.3
234,684 + PGA1_262p02160 0.77 -0.8
234,692 - PGA1_262p02160 0.78 +1.0
234,692 - PGA1_262p02160 0.78 +1.2
234,732 + PGA1_262p02160 0.82 +1.0
234,735 - PGA1_262p02160 0.82 +0.3
234,740 - PGA1_262p02160 0.83 -1.0
234,752 - PGA1_262p02160 0.84 +0.6
234,785 - PGA1_262p02160 0.87 +0.5
234,785 - PGA1_262p02160 0.87 -1.0

Or see this region's nucleotide sequence