Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33400 and PGA1_c33410 overlap by 14 nucleotides PGA1_c33410 and PGA1_c33420 overlap by 4 nucleotides PGA1_c33420 and PGA1_c33430 are separated by 118 nucleotides PGA1_c33430 and PGA1_c33440 overlap by 28 nucleotides
PGA1_c33400: PGA1_c33400 - leucyl-tRNA synthetase LeuS, at 3,498,955 to 3,501,561
_c33400
PGA1_c33410: PGA1_c33410 - Predicted secreted (periplasmic) protein, at 3,501,548 to 3,502,090
_c33410
PGA1_c33420: PGA1_c33420 - DNA polymerase 3-like protein, at 3,502,087 to 3,503,115
_c33420
PGA1_c33430: PGA1_c33430 - glutathione S-transferase-like protein, at 3,503,234 to 3,503,824
_c33430
PGA1_c33440: PGA1_c33440 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 3,503,797 to 3,505,020
_c33440
Position (kb)
3502
3503
3504 Strain fitness (log2 ratio)
-1
0
1
2 at 3502.030 kb on + strand, within PGA1_c33410 at 3503.076 kb on + strand at 3503.115 kb on + strand at 3503.118 kb on - strand at 3503.129 kb on + strand at 3503.137 kb on - strand at 3503.180 kb on - strand at 3503.208 kb on + strand at 3503.274 kb on - strand at 3503.276 kb on - strand at 3503.329 kb on + strand, within PGA1_c33430 at 3503.380 kb on - strand, within PGA1_c33430 at 3503.388 kb on - strand, within PGA1_c33430 at 3503.470 kb on - strand, within PGA1_c33430 at 3503.476 kb on + strand, within PGA1_c33430 at 3503.539 kb on - strand, within PGA1_c33430 at 3503.539 kb on - strand, within PGA1_c33430 at 3503.556 kb on + strand, within PGA1_c33430 at 3503.556 kb on + strand, within PGA1_c33430 at 3503.556 kb on + strand, within PGA1_c33430 at 3503.564 kb on - strand, within PGA1_c33430 at 3503.566 kb on + strand, within PGA1_c33430 at 3503.572 kb on + strand, within PGA1_c33430 at 3503.578 kb on + strand, within PGA1_c33430 at 3503.578 kb on + strand, within PGA1_c33430 at 3503.580 kb on - strand, within PGA1_c33430 at 3503.590 kb on + strand, within PGA1_c33430 at 3503.590 kb on + strand, within PGA1_c33430 at 3503.635 kb on + strand, within PGA1_c33430 at 3503.669 kb on + strand, within PGA1_c33430 at 3503.675 kb on + strand, within PGA1_c33430 at 3503.711 kb on - strand, within PGA1_c33430 at 3503.756 kb on + strand, within PGA1_c33430 at 3503.870 kb on + strand at 3503.877 kb on + strand at 3503.892 kb on + strand at 3503.907 kb on + strand at 3503.946 kb on - strand, within PGA1_c33440 at 3503.999 kb on - strand, within PGA1_c33440 at 3504.059 kb on - strand, within PGA1_c33440 at 3504.064 kb on - strand, within PGA1_c33440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 3,502,030 + PGA1_c33410 0.89 -0.8 3,503,076 + +0.5 3,503,115 + -0.4 3,503,118 - +0.2 3,503,129 + -0.5 3,503,137 - -0.2 3,503,180 - +0.7 3,503,208 + +0.8 3,503,274 - -1.6 3,503,276 - -0.8 3,503,329 + PGA1_c33430 0.16 -0.8 3,503,380 - PGA1_c33430 0.25 +1.3 3,503,388 - PGA1_c33430 0.26 +0.6 3,503,470 - PGA1_c33430 0.40 +0.1 3,503,476 + PGA1_c33430 0.41 -0.2 3,503,539 - PGA1_c33430 0.52 +0.1 3,503,539 - PGA1_c33430 0.52 +1.2 3,503,556 + PGA1_c33430 0.54 -0.9 3,503,556 + PGA1_c33430 0.54 -0.4 3,503,556 + PGA1_c33430 0.54 +0.1 3,503,564 - PGA1_c33430 0.56 +0.5 3,503,566 + PGA1_c33430 0.56 -1.5 3,503,572 + PGA1_c33430 0.57 +2.0 3,503,578 + PGA1_c33430 0.58 +0.0 3,503,578 + PGA1_c33430 0.58 -1.5 3,503,580 - PGA1_c33430 0.59 +0.0 3,503,590 + PGA1_c33430 0.60 +0.8 3,503,590 + PGA1_c33430 0.60 -0.5 3,503,635 + PGA1_c33430 0.68 -0.3 3,503,669 + PGA1_c33430 0.74 +1.2 3,503,675 + PGA1_c33430 0.75 -0.9 3,503,711 - PGA1_c33430 0.81 -0.7 3,503,756 + PGA1_c33430 0.88 +2.2 3,503,870 + -0.0 3,503,877 + +0.3 3,503,892 + +0.2 3,503,907 + +1.5 3,503,946 - PGA1_c33440 0.12 +0.1 3,503,999 - PGA1_c33440 0.17 +0.0 3,504,059 - PGA1_c33440 0.21 +0.0 3,504,064 - PGA1_c33440 0.22 -0.9
Or see this region's nucleotide sequence