Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31590 and PGA1_c31600 are separated by 177 nucleotides PGA1_c31600 and PGA1_c31610 are separated by 3 nucleotides
PGA1_c31590: PGA1_c31590 - putative membrane transport protein, at 3,299,608 to 3,300,546
_c31590
PGA1_c31600: PGA1_c31600 - S-formylglutathione hydrolase FghA, at 3,300,724 to 3,301,557
_c31600
PGA1_c31610: PGA1_c31610 - putative soluble pyridine nucleotide transhydrogenase, at 3,301,561 to 3,303,054
_c31610
Position (kb)
3300
3301
3302 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3299.729 kb on + strand, within PGA1_c31590 at 3299.775 kb on - strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.802 kb on + strand, within PGA1_c31590 at 3299.810 kb on + strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.810 kb on - strand, within PGA1_c31590 at 3299.839 kb on + strand, within PGA1_c31590 at 3299.842 kb on - strand, within PGA1_c31590 at 3299.860 kb on + strand, within PGA1_c31590 at 3299.860 kb on + strand, within PGA1_c31590 at 3299.860 kb on + strand, within PGA1_c31590 at 3299.868 kb on - strand, within PGA1_c31590 at 3299.878 kb on - strand, within PGA1_c31590 at 3299.887 kb on + strand, within PGA1_c31590 at 3299.966 kb on - strand, within PGA1_c31590 at 3299.978 kb on + strand, within PGA1_c31590 at 3300.002 kb on - strand, within PGA1_c31590 at 3300.027 kb on + strand, within PGA1_c31590 at 3300.035 kb on - strand, within PGA1_c31590 at 3300.079 kb on - strand, within PGA1_c31590 at 3300.092 kb on + strand, within PGA1_c31590 at 3300.095 kb on - strand, within PGA1_c31590 at 3300.121 kb on - strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.136 kb on + strand, within PGA1_c31590 at 3300.144 kb on - strand, within PGA1_c31590 at 3300.144 kb on - strand, within PGA1_c31590 at 3300.144 kb on - strand, within PGA1_c31590 at 3300.146 kb on + strand, within PGA1_c31590 at 3300.146 kb on + strand, within PGA1_c31590 at 3300.146 kb on + strand, within PGA1_c31590 at 3300.146 kb on - strand, within PGA1_c31590 at 3300.151 kb on + strand, within PGA1_c31590 at 3300.151 kb on + strand, within PGA1_c31590 at 3300.151 kb on + strand, within PGA1_c31590 at 3300.151 kb on + strand, within PGA1_c31590 at 3300.154 kb on - strand, within PGA1_c31590 at 3300.154 kb on - strand, within PGA1_c31590 at 3300.154 kb on - strand, within PGA1_c31590 at 3300.154 kb on - strand, within PGA1_c31590 at 3300.159 kb on - strand, within PGA1_c31590 at 3300.159 kb on - strand, within PGA1_c31590 at 3300.209 kb on + strand, within PGA1_c31590 at 3300.432 kb on + strand, within PGA1_c31590 at 3300.435 kb on - strand, within PGA1_c31590 at 3300.440 kb on - strand, within PGA1_c31590 at 3300.450 kb on + strand, within PGA1_c31590 at 3300.472 kb on - strand at 3300.477 kb on - strand at 3300.479 kb on + strand at 3300.487 kb on - strand at 3300.487 kb on - strand at 3300.488 kb on + strand at 3300.541 kb on + strand at 3300.549 kb on - strand at 3300.549 kb on - strand at 3300.549 kb on - strand at 3300.549 kb on - strand at 3300.549 kb on - strand at 3300.581 kb on + strand at 3300.584 kb on + strand at 3300.589 kb on - strand at 3300.606 kb on + strand at 3300.608 kb on + strand at 3300.667 kb on - strand at 3300.668 kb on + strand at 3300.678 kb on + strand at 3300.732 kb on - strand at 3300.750 kb on + strand at 3300.758 kb on - strand at 3300.809 kb on + strand, within PGA1_c31600 at 3300.817 kb on - strand, within PGA1_c31600 at 3300.817 kb on - strand, within PGA1_c31600 at 3300.845 kb on + strand, within PGA1_c31600 at 3300.848 kb on + strand, within PGA1_c31600 at 3300.903 kb on + strand, within PGA1_c31600 at 3300.916 kb on + strand, within PGA1_c31600 at 3300.916 kb on + strand, within PGA1_c31600 at 3300.939 kb on + strand, within PGA1_c31600 at 3301.019 kb on - strand, within PGA1_c31600 at 3301.047 kb on + strand, within PGA1_c31600 at 3301.058 kb on - strand, within PGA1_c31600 at 3301.177 kb on - strand, within PGA1_c31600 at 3301.219 kb on + strand, within PGA1_c31600 at 3301.245 kb on + strand, within PGA1_c31600 at 3301.327 kb on + strand, within PGA1_c31600 at 3301.358 kb on + strand, within PGA1_c31600 at 3301.382 kb on + strand, within PGA1_c31600 at 3301.430 kb on - strand, within PGA1_c31600 at 3301.430 kb on - strand, within PGA1_c31600 at 3301.436 kb on - strand, within PGA1_c31600 at 3301.470 kb on + strand, within PGA1_c31600 at 3301.470 kb on + strand, within PGA1_c31600 at 3301.475 kb on + strand at 3301.498 kb on + strand at 3301.508 kb on + strand at 3301.537 kb on + strand at 3301.547 kb on + strand at 3301.567 kb on + strand at 3301.649 kb on + strand at 3301.654 kb on - strand at 3301.698 kb on + strand at 3301.698 kb on + strand at 3301.698 kb on + strand at 3301.706 kb on - strand at 3301.735 kb on + strand, within PGA1_c31610 at 3301.743 kb on - strand, within PGA1_c31610 at 3301.954 kb on + strand, within PGA1_c31610 at 3301.966 kb on + strand, within PGA1_c31610 at 3302.101 kb on - strand, within PGA1_c31610 at 3302.113 kb on + strand, within PGA1_c31610 at 3302.121 kb on - strand, within PGA1_c31610 at 3302.150 kb on + strand, within PGA1_c31610 at 3302.150 kb on + strand, within PGA1_c31610 at 3302.150 kb on + strand, within PGA1_c31610 at 3302.150 kb on + strand, within PGA1_c31610 at 3302.150 kb on + strand, within PGA1_c31610 at 3302.158 kb on - strand, within PGA1_c31610 at 3302.158 kb on - strand, within PGA1_c31610 at 3302.158 kb on - strand, within PGA1_c31610 at 3302.158 kb on - strand, within PGA1_c31610 at 3302.158 kb on - strand, within PGA1_c31610 at 3302.180 kb on - strand, within PGA1_c31610 at 3302.311 kb on - strand, within PGA1_c31610 at 3302.332 kb on + strand, within PGA1_c31610 at 3302.376 kb on + strand, within PGA1_c31610 at 3302.396 kb on + strand, within PGA1_c31610 at 3302.508 kb on + strand, within PGA1_c31610 at 3302.525 kb on - strand, within PGA1_c31610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 3,299,729 + PGA1_c31590 0.13 -0.8 3,299,775 - PGA1_c31590 0.18 -2.8 3,299,802 + PGA1_c31590 0.21 -0.3 3,299,802 + PGA1_c31590 0.21 +0.2 3,299,802 + PGA1_c31590 0.21 +0.6 3,299,802 + PGA1_c31590 0.21 +0.0 3,299,802 + PGA1_c31590 0.21 +0.1 3,299,802 + PGA1_c31590 0.21 -0.0 3,299,802 + PGA1_c31590 0.21 -0.3 3,299,802 + PGA1_c31590 0.21 -0.2 3,299,810 + PGA1_c31590 0.22 -1.6 3,299,810 - PGA1_c31590 0.22 +0.1 3,299,810 - PGA1_c31590 0.22 -0.1 3,299,810 - PGA1_c31590 0.22 -0.2 3,299,810 - PGA1_c31590 0.22 -0.4 3,299,810 - PGA1_c31590 0.22 -0.7 3,299,810 - PGA1_c31590 0.22 -0.2 3,299,839 + PGA1_c31590 0.25 +0.6 3,299,842 - PGA1_c31590 0.25 -1.4 3,299,860 + PGA1_c31590 0.27 -1.2 3,299,860 + PGA1_c31590 0.27 +0.3 3,299,860 + PGA1_c31590 0.27 +1.2 3,299,868 - PGA1_c31590 0.28 +0.2 3,299,878 - PGA1_c31590 0.29 -0.2 3,299,887 + PGA1_c31590 0.30 +0.5 3,299,966 - PGA1_c31590 0.38 +0.3 3,299,978 + PGA1_c31590 0.39 -0.3 3,300,002 - PGA1_c31590 0.42 +0.1 3,300,027 + PGA1_c31590 0.45 +0.6 3,300,035 - PGA1_c31590 0.45 -0.7 3,300,079 - PGA1_c31590 0.50 +0.4 3,300,092 + PGA1_c31590 0.52 +1.2 3,300,095 - PGA1_c31590 0.52 +0.7 3,300,121 - PGA1_c31590 0.55 -0.4 3,300,136 + PGA1_c31590 0.56 +0.1 3,300,136 + PGA1_c31590 0.56 +0.3 3,300,136 + PGA1_c31590 0.56 -1.5 3,300,136 + PGA1_c31590 0.56 -0.7 3,300,136 + PGA1_c31590 0.56 +1.5 3,300,136 + PGA1_c31590 0.56 +0.1 3,300,144 - PGA1_c31590 0.57 -0.6 3,300,144 - PGA1_c31590 0.57 -1.3 3,300,144 - PGA1_c31590 0.57 -1.3 3,300,146 + PGA1_c31590 0.57 +0.1 3,300,146 + PGA1_c31590 0.57 -0.2 3,300,146 + PGA1_c31590 0.57 +1.2 3,300,146 - PGA1_c31590 0.57 +0.3 3,300,151 + PGA1_c31590 0.58 +0.1 3,300,151 + PGA1_c31590 0.58 -0.1 3,300,151 + PGA1_c31590 0.58 +0.3 3,300,151 + PGA1_c31590 0.58 +0.4 3,300,154 - PGA1_c31590 0.58 -0.1 3,300,154 - PGA1_c31590 0.58 +0.3 3,300,154 - PGA1_c31590 0.58 -0.4 3,300,154 - PGA1_c31590 0.58 +1.9 3,300,159 - PGA1_c31590 0.59 +0.6 3,300,159 - PGA1_c31590 0.59 +0.4 3,300,209 + PGA1_c31590 0.64 -0.8 3,300,432 + PGA1_c31590 0.88 -0.4 3,300,435 - PGA1_c31590 0.88 +1.0 3,300,440 - PGA1_c31590 0.89 -0.2 3,300,450 + PGA1_c31590 0.90 -1.3 3,300,472 - +0.9 3,300,477 - +0.2 3,300,479 + -0.6 3,300,487 - +0.1 3,300,487 - -0.0 3,300,488 + -0.5 3,300,541 + -0.1 3,300,549 - +0.4 3,300,549 - -0.6 3,300,549 - -0.4 3,300,549 - -0.6 3,300,549 - -1.3 3,300,581 + -0.8 3,300,584 + -0.4 3,300,589 - -1.6 3,300,606 + -1.6 3,300,608 + +1.3 3,300,667 - -0.3 3,300,668 + +2.0 3,300,678 + -0.9 3,300,732 - -1.0 3,300,750 + -0.2 3,300,758 - +0.0 3,300,809 + PGA1_c31600 0.10 -0.8 3,300,817 - PGA1_c31600 0.11 +0.7 3,300,817 - PGA1_c31600 0.11 -1.7 3,300,845 + PGA1_c31600 0.15 -1.4 3,300,848 + PGA1_c31600 0.15 -0.7 3,300,903 + PGA1_c31600 0.21 -0.2 3,300,916 + PGA1_c31600 0.23 -0.1 3,300,916 + PGA1_c31600 0.23 -1.1 3,300,939 + PGA1_c31600 0.26 -0.6 3,301,019 - PGA1_c31600 0.35 -0.9 3,301,047 + PGA1_c31600 0.39 -1.5 3,301,058 - PGA1_c31600 0.40 -0.9 3,301,177 - PGA1_c31600 0.54 -0.7 3,301,219 + PGA1_c31600 0.59 +0.7 3,301,245 + PGA1_c31600 0.62 -0.2 3,301,327 + PGA1_c31600 0.72 +0.1 3,301,358 + PGA1_c31600 0.76 -1.1 3,301,382 + PGA1_c31600 0.79 -0.3 3,301,430 - PGA1_c31600 0.85 +0.3 3,301,430 - PGA1_c31600 0.85 -2.9 3,301,436 - PGA1_c31600 0.85 -0.7 3,301,470 + PGA1_c31600 0.89 +0.7 3,301,470 + PGA1_c31600 0.89 +0.1 3,301,475 + +3.0 3,301,498 + -1.2 3,301,508 + -0.7 3,301,537 + -0.6 3,301,547 + +0.1 3,301,567 + -0.9 3,301,649 + +0.7 3,301,654 - -1.1 3,301,698 + -0.1 3,301,698 + -2.4 3,301,698 + -0.9 3,301,706 - -0.4 3,301,735 + PGA1_c31610 0.12 -2.2 3,301,743 - PGA1_c31610 0.12 -2.2 3,301,954 + PGA1_c31610 0.26 -1.4 3,301,966 + PGA1_c31610 0.27 -0.6 3,302,101 - PGA1_c31610 0.36 -2.2 3,302,113 + PGA1_c31610 0.37 -1.6 3,302,121 - PGA1_c31610 0.37 -1.7 3,302,150 + PGA1_c31610 0.39 -0.5 3,302,150 + PGA1_c31610 0.39 +0.1 3,302,150 + PGA1_c31610 0.39 -1.0 3,302,150 + PGA1_c31610 0.39 -0.5 3,302,150 + PGA1_c31610 0.39 -2.7 3,302,158 - PGA1_c31610 0.40 -1.1 3,302,158 - PGA1_c31610 0.40 -1.0 3,302,158 - PGA1_c31610 0.40 -0.6 3,302,158 - PGA1_c31610 0.40 -1.3 3,302,158 - PGA1_c31610 0.40 -1.5 3,302,180 - PGA1_c31610 0.41 -1.9 3,302,311 - PGA1_c31610 0.50 -0.9 3,302,332 + PGA1_c31610 0.52 -1.0 3,302,376 + PGA1_c31610 0.55 -1.2 3,302,396 + PGA1_c31610 0.56 -1.7 3,302,508 + PGA1_c31610 0.63 -1.6 3,302,525 - PGA1_c31610 0.65 -0.4
Or see this region's nucleotide sequence