Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28920 and PGA1_c28930 are separated by 368 nucleotides PGA1_c28930 and PGA1_c28940 are separated by 141 nucleotides
PGA1_c28920: PGA1_c28920 - 'RNA polymerase sigma factor (sigma-70 family; ECF41 subgroup)', at 3,033,261 to 3,034,142
_c28920
PGA1_c28930: PGA1_c28930 - dihydrodipicolinate synthase DapA, at 3,034,511 to 3,035,383
_c28930
PGA1_c28940: PGA1_c28940 - transglycosylase SLT domain-containing protein, at 3,035,525 to 3,037,483
_c28940
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3033.513 kb on - strand, within PGA1_c28920 at 3033.513 kb on - strand, within PGA1_c28920 at 3033.538 kb on + strand, within PGA1_c28920 at 3033.561 kb on + strand, within PGA1_c28920 at 3033.569 kb on + strand, within PGA1_c28920 at 3033.690 kb on + strand, within PGA1_c28920 at 3033.695 kb on + strand, within PGA1_c28920 at 3033.732 kb on + strand, within PGA1_c28920 at 3033.768 kb on + strand, within PGA1_c28920 at 3033.768 kb on + strand, within PGA1_c28920 at 3033.776 kb on - strand, within PGA1_c28920 at 3033.776 kb on - strand, within PGA1_c28920 at 3033.995 kb on + strand, within PGA1_c28920 at 3033.995 kb on + strand, within PGA1_c28920 at 3034.046 kb on + strand, within PGA1_c28920 at 3034.105 kb on - strand at 3034.131 kb on + strand at 3034.131 kb on + strand at 3034.177 kb on + strand at 3034.185 kb on - strand at 3034.195 kb on + strand at 3034.208 kb on - strand at 3034.237 kb on + strand at 3034.245 kb on - strand at 3034.361 kb on - strand at 3034.387 kb on + strand at 3034.387 kb on + strand at 3034.395 kb on - strand at 3034.395 kb on - strand at 3034.395 kb on - strand at 3034.395 kb on - strand at 3034.420 kb on + strand at 3034.420 kb on + strand at 3034.497 kb on + strand at 3034.497 kb on - strand at 3034.505 kb on - strand at 3034.509 kb on + strand at 3035.564 kb on + strand at 3035.569 kb on + strand at 3035.572 kb on - strand at 3035.588 kb on + strand at 3035.588 kb on + strand at 3035.602 kb on - strand at 3035.676 kb on + strand at 3035.873 kb on + strand, within PGA1_c28940 at 3035.896 kb on + strand, within PGA1_c28940 at 3035.896 kb on + strand, within PGA1_c28940 at 3035.922 kb on + strand, within PGA1_c28940 at 3035.925 kb on + strand, within PGA1_c28940 at 3035.941 kb on + strand, within PGA1_c28940 at 3035.943 kb on - strand, within PGA1_c28940 at 3035.944 kb on - strand, within PGA1_c28940 at 3036.024 kb on - strand, within PGA1_c28940 at 3036.043 kb on + strand, within PGA1_c28940 at 3036.088 kb on + strand, within PGA1_c28940 at 3036.113 kb on + strand, within PGA1_c28940 at 3036.118 kb on + strand, within PGA1_c28940 at 3036.375 kb on + strand, within PGA1_c28940 at 3036.375 kb on + strand, within PGA1_c28940
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 3,033,513 - PGA1_c28920 0.29 -0.5 3,033,513 - PGA1_c28920 0.29 +0.8 3,033,538 + PGA1_c28920 0.31 +1.7 3,033,561 + PGA1_c28920 0.34 -0.1 3,033,569 + PGA1_c28920 0.35 +1.4 3,033,690 + PGA1_c28920 0.49 +1.3 3,033,695 + PGA1_c28920 0.49 -0.1 3,033,732 + PGA1_c28920 0.53 +2.5 3,033,768 + PGA1_c28920 0.57 +1.8 3,033,768 + PGA1_c28920 0.57 +0.9 3,033,776 - PGA1_c28920 0.58 +0.5 3,033,776 - PGA1_c28920 0.58 +0.7 3,033,995 + PGA1_c28920 0.83 -0.6 3,033,995 + PGA1_c28920 0.83 +0.7 3,034,046 + PGA1_c28920 0.89 -0.3 3,034,105 - -0.2 3,034,131 + -0.2 3,034,131 + +0.7 3,034,177 + -0.1 3,034,185 - +0.9 3,034,195 + -1.1 3,034,208 - +1.9 3,034,237 + +0.5 3,034,245 - -0.1 3,034,361 - -0.6 3,034,387 + -1.1 3,034,387 + +0.9 3,034,395 - +0.8 3,034,395 - +1.1 3,034,395 - +1.8 3,034,395 - -0.1 3,034,420 + -0.5 3,034,420 + +1.7 3,034,497 + +2.7 3,034,497 - -0.9 3,034,505 - -0.2 3,034,509 + -0.6 3,035,564 + +0.5 3,035,569 + -1.5 3,035,572 - -1.5 3,035,588 + +0.5 3,035,588 + -1.1 3,035,602 - -1.1 3,035,676 + -2.3 3,035,873 + PGA1_c28940 0.18 -0.3 3,035,896 + PGA1_c28940 0.19 +0.5 3,035,896 + PGA1_c28940 0.19 -0.5 3,035,922 + PGA1_c28940 0.20 -1.1 3,035,925 + PGA1_c28940 0.20 -0.1 3,035,941 + PGA1_c28940 0.21 -1.1 3,035,943 - PGA1_c28940 0.21 +1.5 3,035,944 - PGA1_c28940 0.21 -1.1 3,036,024 - PGA1_c28940 0.25 -1.1 3,036,043 + PGA1_c28940 0.26 -1.8 3,036,088 + PGA1_c28940 0.29 +0.5 3,036,113 + PGA1_c28940 0.30 -0.2 3,036,118 + PGA1_c28940 0.30 -0.1 3,036,375 + PGA1_c28940 0.43 +1.0 3,036,375 + PGA1_c28940 0.43 -0.2
Or see this region's nucleotide sequence