Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02880

Experiment: m.b. Zinc 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02870 and PGA1_c02880 are separated by 314 nucleotidesPGA1_c02880 and PGA1_c02890 are separated by 196 nucleotidesPGA1_c02890 and PGA1_c02900 overlap by 1 nucleotides PGA1_c02870: PGA1_c02870 - short chain dehydrogenase, at 276,646 to 277,422 _c02870 PGA1_c02880: PGA1_c02880 - uvrABC system protein C, at 277,737 to 279,626 _c02880 PGA1_c02890: PGA1_c02890 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA, at 279,823 to 280,494 _c02890 PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739 _c02900 Position (kb) 277 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.754 kb on - strand, within PGA1_c02870at 276.799 kb on + strand, within PGA1_c02870at 276.807 kb on - strand, within PGA1_c02870at 276.830 kb on - strand, within PGA1_c02870at 276.869 kb on + strand, within PGA1_c02870at 276.887 kb on + strand, within PGA1_c02870at 276.969 kb on - strand, within PGA1_c02870at 277.025 kb on - strand, within PGA1_c02870at 277.097 kb on - strand, within PGA1_c02870at 277.121 kb on + strand, within PGA1_c02870at 277.121 kb on - strand, within PGA1_c02870at 277.129 kb on - strand, within PGA1_c02870at 277.161 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.166 kb on + strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.174 kb on - strand, within PGA1_c02870at 277.214 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.229 kb on + strand, within PGA1_c02870at 277.271 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.289 kb on + strand, within PGA1_c02870at 277.297 kb on - strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.305 kb on + strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.313 kb on - strand, within PGA1_c02870at 277.344 kb on + strand, within PGA1_c02870at 277.381 kb on + strandat 277.389 kb on - strandat 277.396 kb on + strandat 277.404 kb on - strandat 277.426 kb on + strandat 277.439 kb on + strandat 277.439 kb on + strandat 277.447 kb on - strandat 277.447 kb on - strandat 277.447 kb on - strandat 277.473 kb on + strandat 277.473 kb on + strandat 277.482 kb on - strandat 277.571 kb on - strandat 277.630 kb on + strandat 277.637 kb on + strandat 277.645 kb on - strandat 277.645 kb on - strandat 277.647 kb on + strandat 277.647 kb on + strandat 277.655 kb on - strandat 277.655 kb on - strandat 277.671 kb on - strandat 277.746 kb on - strandat 277.751 kb on + strandat 277.751 kb on + strandat 277.759 kb on - strandat 277.759 kb on - strandat 277.759 kb on - strandat 277.794 kb on + strandat 277.797 kb on - strandat 277.801 kb on + strandat 277.816 kb on + strandat 277.824 kb on + strandat 277.824 kb on + strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.832 kb on - strandat 277.852 kb on - strandat 277.880 kb on - strandat 277.924 kb on + strandat 277.924 kb on + strandat 277.932 kb on - strand, within PGA1_c02880at 277.932 kb on - strand, within PGA1_c02880at 277.985 kb on + strand, within PGA1_c02880at 278.053 kb on - strand, within PGA1_c02880at 278.053 kb on - strand, within PGA1_c02880at 278.057 kb on + strand, within PGA1_c02880at 278.070 kb on - strand, within PGA1_c02880at 278.201 kb on - strand, within PGA1_c02880at 278.238 kb on - strand, within PGA1_c02880at 278.328 kb on - strand, within PGA1_c02880at 278.480 kb on + strand, within PGA1_c02880at 278.488 kb on - strand, within PGA1_c02880at 278.499 kb on + strand, within PGA1_c02880at 278.506 kb on - strand, within PGA1_c02880at 278.554 kb on - strand, within PGA1_c02880at 278.571 kb on + strand, within PGA1_c02880at 278.612 kb on + strand, within PGA1_c02880at 278.620 kb on - strand, within PGA1_c02880at 278.701 kb on - strand, within PGA1_c02880at 278.739 kb on - strand, within PGA1_c02880at 278.791 kb on - strand, within PGA1_c02880at 278.827 kb on + strand, within PGA1_c02880at 278.925 kb on + strand, within PGA1_c02880at 278.995 kb on + strand, within PGA1_c02880at 278.995 kb on + strand, within PGA1_c02880at 279.008 kb on + strand, within PGA1_c02880at 279.091 kb on - strand, within PGA1_c02880at 279.107 kb on + strand, within PGA1_c02880at 279.115 kb on - strand, within PGA1_c02880at 279.115 kb on - strand, within PGA1_c02880at 279.117 kb on + strand, within PGA1_c02880at 279.218 kb on - strand, within PGA1_c02880at 279.241 kb on - strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.260 kb on - strand, within PGA1_c02880at 279.322 kb on + strand, within PGA1_c02880at 279.345 kb on + strand, within PGA1_c02880at 279.410 kb on + strand, within PGA1_c02880at 279.449 kb on - strandat 279.464 kb on - strandat 279.539 kb on + strandat 279.620 kb on + strandat 279.622 kb on + strandat 279.665 kb on + strandat 279.691 kb on - strandat 279.693 kb on + strandat 279.725 kb on - strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.758 kb on - strandat 279.758 kb on - strandat 279.758 kb on - strandat 279.758 kb on - strandat 280.610 kb on + strand, within PGA1_c02900at 280.618 kb on - strand, within PGA1_c02900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM
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276,754 - PGA1_c02870 0.14 -0.5
276,799 + PGA1_c02870 0.20 -1.7
276,807 - PGA1_c02870 0.21 -0.1
276,830 - PGA1_c02870 0.24 -2.4
276,869 + PGA1_c02870 0.29 +0.4
276,887 + PGA1_c02870 0.31 -0.3
276,969 - PGA1_c02870 0.42 -0.4
277,025 - PGA1_c02870 0.49 +1.0
277,097 - PGA1_c02870 0.58 -0.3
277,121 + PGA1_c02870 0.61 -0.5
277,121 - PGA1_c02870 0.61 -0.5
277,129 - PGA1_c02870 0.62 -0.3
277,161 + PGA1_c02870 0.66 +0.5
277,166 + PGA1_c02870 0.67 +1.1
277,166 + PGA1_c02870 0.67 -0.1
277,166 + PGA1_c02870 0.67 +1.1
277,166 + PGA1_c02870 0.67 +0.3
277,166 + PGA1_c02870 0.67 +1.5
277,166 + PGA1_c02870 0.67 -0.9
277,166 + PGA1_c02870 0.67 +0.7
277,174 - PGA1_c02870 0.68 -2.0
277,174 - PGA1_c02870 0.68 -0.7
277,174 - PGA1_c02870 0.68 -2.1
277,174 - PGA1_c02870 0.68 +0.1
277,174 - PGA1_c02870 0.68 -0.3
277,214 + PGA1_c02870 0.73 +0.4
277,229 + PGA1_c02870 0.75 -0.7
277,229 + PGA1_c02870 0.75 -1.0
277,229 + PGA1_c02870 0.75 +0.9
277,229 + PGA1_c02870 0.75 +0.7
277,229 + PGA1_c02870 0.75 -0.9
277,229 + PGA1_c02870 0.75 +0.1
277,271 + PGA1_c02870 0.80 -1.6
277,289 + PGA1_c02870 0.83 +0.0
277,289 + PGA1_c02870 0.83 +0.4
277,289 + PGA1_c02870 0.83 -0.9
277,289 + PGA1_c02870 0.83 +0.7
277,297 - PGA1_c02870 0.84 -0.4
277,305 + PGA1_c02870 0.85 +1.6
277,305 + PGA1_c02870 0.85 +0.3
277,305 + PGA1_c02870 0.85 +0.3
277,305 + PGA1_c02870 0.85 -1.4
277,313 - PGA1_c02870 0.86 -0.8
277,313 - PGA1_c02870 0.86 -1.0
277,313 - PGA1_c02870 0.86 +0.6
277,313 - PGA1_c02870 0.86 -0.1
277,313 - PGA1_c02870 0.86 -0.9
277,344 + PGA1_c02870 0.90 +0.7
277,381 + -0.0
277,389 - +0.7
277,396 + +1.1
277,404 - +0.2
277,426 + -1.7
277,439 + -0.9
277,439 + +0.1
277,447 - -1.4
277,447 - +1.9
277,447 - +1.0
277,473 + -0.1
277,473 + -2.7
277,482 - -2.4
277,571 - -1.6
277,630 + +0.4
277,637 + -0.7
277,645 - -0.1
277,645 - -0.4
277,647 + -0.3
277,647 + +0.9
277,655 - +0.5
277,655 - -0.0
277,671 - +0.2
277,746 - +0.2
277,751 + -0.1
277,751 + +0.9
277,759 - -1.0
277,759 - -1.0
277,759 - -1.0
277,794 + +0.9
277,797 - -2.6
277,801 + -1.3
277,816 + -1.6
277,824 + -0.8
277,824 + -0.3
277,832 - -1.1
277,832 - -1.9
277,832 - +0.5
277,832 - -1.9
277,852 - -0.8
277,880 - -0.0
277,924 + -1.8
277,924 + -0.9
277,932 - PGA1_c02880 0.10 -2.0
277,932 - PGA1_c02880 0.10 -1.7
277,985 + PGA1_c02880 0.13 -0.6
278,053 - PGA1_c02880 0.17 -0.8
278,053 - PGA1_c02880 0.17 -1.7
278,057 + PGA1_c02880 0.17 +1.3
278,070 - PGA1_c02880 0.18 +0.5
278,201 - PGA1_c02880 0.25 -0.6
278,238 - PGA1_c02880 0.27 +0.7
278,328 - PGA1_c02880 0.31 -0.6
278,480 + PGA1_c02880 0.39 -1.7
278,488 - PGA1_c02880 0.40 -1.0
278,499 + PGA1_c02880 0.40 -0.1
278,506 - PGA1_c02880 0.41 -1.6
278,554 - PGA1_c02880 0.43 -0.7
278,571 + PGA1_c02880 0.44 +0.7
278,612 + PGA1_c02880 0.46 -0.7
278,620 - PGA1_c02880 0.47 -0.9
278,701 - PGA1_c02880 0.51 +0.2
278,739 - PGA1_c02880 0.53 -0.6
278,791 - PGA1_c02880 0.56 -1.5
278,827 + PGA1_c02880 0.58 -0.8
278,925 + PGA1_c02880 0.63 -2.7
278,995 + PGA1_c02880 0.67 -1.4
278,995 + PGA1_c02880 0.67 -0.0
279,008 + PGA1_c02880 0.67 -0.6
279,091 - PGA1_c02880 0.72 -2.4
279,107 + PGA1_c02880 0.72 -1.1
279,115 - PGA1_c02880 0.73 -0.3
279,115 - PGA1_c02880 0.73 -1.3
279,117 + PGA1_c02880 0.73 +0.1
279,218 - PGA1_c02880 0.78 -3.4
279,241 - PGA1_c02880 0.80 -0.5
279,252 + PGA1_c02880 0.80 -1.3
279,252 + PGA1_c02880 0.80 -1.6
279,252 + PGA1_c02880 0.80 -1.4
279,260 - PGA1_c02880 0.81 -2.0
279,322 + PGA1_c02880 0.84 -1.1
279,345 + PGA1_c02880 0.85 -0.5
279,410 + PGA1_c02880 0.89 -0.8
279,449 - -0.9
279,464 - -0.1
279,539 + -2.1
279,620 + -0.0
279,622 + +0.1
279,665 + +0.0
279,691 - -0.4
279,693 + +0.7
279,725 - -0.3
279,750 + -0.0
279,750 + +0.7
279,750 + +0.1
279,750 + +0.7
279,750 + -2.0
279,758 - -0.6
279,758 - +0.0
279,758 - -1.3
279,758 - +1.4
280,610 + PGA1_c02900 0.47 -0.4
280,618 - PGA1_c02900 0.50 -0.6

Or see this region's nucleotide sequence