Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27820

Experiment: m.b. Zinc 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27800 and PGA1_c27810 overlap by 4 nucleotidesPGA1_c27810 and PGA1_c27820 are separated by 72 nucleotidesPGA1_c27820 and PGA1_c27830 overlap by 1 nucleotidesPGA1_c27830 and PGA1_c27840 are separated by 16 nucleotides PGA1_c27800: PGA1_c27800 - L-aspartate oxidase NadB, at 2,895,544 to 2,897,223 _c27800 PGA1_c27810: PGA1_c27810 - nicotinate-nucleotide pyrophosphorylase, at 2,897,220 to 2,898,074 _c27810 PGA1_c27820: PGA1_c27820 - hypothetical protein, at 2,898,147 to 2,899,607 _c27820 PGA1_c27830: PGA1_c27830 - hypothetical protein, at 2,899,607 to 2,900,392 _c27830 PGA1_c27840: PGA1_c27840 - putative polysaccharide biosynthesis protein, at 2,900,409 to 2,900,810 _c27840 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2897.151 kb on + strandat 2897.183 kb on - strandat 2897.275 kb on - strandat 2897.298 kb on - strandat 2897.352 kb on - strand, within PGA1_c27810at 2897.460 kb on + strand, within PGA1_c27810at 2897.460 kb on + strand, within PGA1_c27810at 2897.465 kb on + strand, within PGA1_c27810at 2897.473 kb on - strand, within PGA1_c27810at 2897.644 kb on + strand, within PGA1_c27810at 2897.644 kb on + strand, within PGA1_c27810at 2897.644 kb on + strand, within PGA1_c27810at 2897.652 kb on - strand, within PGA1_c27810at 2897.652 kb on - strand, within PGA1_c27810at 2897.652 kb on - strand, within PGA1_c27810at 2897.654 kb on + strand, within PGA1_c27810at 2897.684 kb on - strand, within PGA1_c27810at 2897.704 kb on + strand, within PGA1_c27810at 2897.722 kb on - strand, within PGA1_c27810at 2897.789 kb on + strand, within PGA1_c27810at 2897.853 kb on + strand, within PGA1_c27810at 2897.853 kb on + strand, within PGA1_c27810at 2897.902 kb on + strand, within PGA1_c27810at 2897.990 kb on + strandat 2897.998 kb on - strandat 2898.032 kb on + strandat 2898.173 kb on - strandat 2898.206 kb on - strandat 2898.218 kb on + strandat 2898.218 kb on + strandat 2898.218 kb on + strandat 2898.226 kb on - strandat 2898.247 kb on + strandat 2898.268 kb on + strandat 2898.290 kb on + strandat 2898.290 kb on + strandat 2898.298 kb on - strand, within PGA1_c27820at 2898.325 kb on - strand, within PGA1_c27820at 2898.406 kb on - strand, within PGA1_c27820at 2898.444 kb on - strand, within PGA1_c27820at 2898.444 kb on - strand, within PGA1_c27820at 2898.463 kb on - strand, within PGA1_c27820at 2898.542 kb on - strand, within PGA1_c27820at 2898.611 kb on + strand, within PGA1_c27820at 2898.616 kb on + strand, within PGA1_c27820at 2898.619 kb on - strand, within PGA1_c27820at 2898.626 kb on + strand, within PGA1_c27820at 2898.695 kb on + strand, within PGA1_c27820at 2898.768 kb on + strand, within PGA1_c27820at 2898.832 kb on - strand, within PGA1_c27820at 2898.876 kb on + strand, within PGA1_c27820at 2898.924 kb on + strand, within PGA1_c27820at 2898.934 kb on + strand, within PGA1_c27820at 2898.942 kb on - strand, within PGA1_c27820at 2899.020 kb on - strand, within PGA1_c27820at 2899.047 kb on + strand, within PGA1_c27820at 2899.216 kb on + strand, within PGA1_c27820at 2899.239 kb on + strand, within PGA1_c27820at 2899.258 kb on + strand, within PGA1_c27820at 2899.304 kb on + strand, within PGA1_c27820at 2899.455 kb on - strand, within PGA1_c27820at 2899.580 kb on + strandat 2899.588 kb on - strandat 2899.588 kb on - strandat 2899.600 kb on + strandat 2899.631 kb on - strandat 2899.637 kb on + strandat 2899.640 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.645 kb on - strandat 2899.650 kb on + strandat 2899.690 kb on - strand, within PGA1_c27830at 2899.702 kb on + strand, within PGA1_c27830at 2899.755 kb on - strand, within PGA1_c27830at 2899.771 kb on + strand, within PGA1_c27830at 2899.816 kb on + strand, within PGA1_c27830at 2899.824 kb on - strand, within PGA1_c27830at 2899.996 kb on - strand, within PGA1_c27830at 2900.067 kb on + strand, within PGA1_c27830at 2900.089 kb on + strand, within PGA1_c27830at 2900.089 kb on + strand, within PGA1_c27830at 2900.097 kb on - strand, within PGA1_c27830at 2900.097 kb on - strand, within PGA1_c27830at 2900.133 kb on + strand, within PGA1_c27830at 2900.141 kb on - strand, within PGA1_c27830at 2900.221 kb on + strand, within PGA1_c27830at 2900.232 kb on + strand, within PGA1_c27830at 2900.232 kb on + strand, within PGA1_c27830at 2900.235 kb on - strand, within PGA1_c27830at 2900.270 kb on + strand, within PGA1_c27830at 2900.296 kb on - strand, within PGA1_c27830at 2900.327 kb on - strandat 2900.358 kb on - strandat 2900.462 kb on - strand, within PGA1_c27840at 2900.462 kb on - strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.508 kb on + strand, within PGA1_c27840at 2900.540 kb on + strand, within PGA1_c27840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM
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2,897,151 + -0.1
2,897,183 - -0.0
2,897,275 - -0.3
2,897,298 - -1.3
2,897,352 - PGA1_c27810 0.15 +0.4
2,897,460 + PGA1_c27810 0.28 -0.3
2,897,460 + PGA1_c27810 0.28 -1.0
2,897,465 + PGA1_c27810 0.29 +0.7
2,897,473 - PGA1_c27810 0.30 -0.1
2,897,644 + PGA1_c27810 0.50 -0.0
2,897,644 + PGA1_c27810 0.50 -0.5
2,897,644 + PGA1_c27810 0.50 +0.7
2,897,652 - PGA1_c27810 0.51 -1.3
2,897,652 - PGA1_c27810 0.51 -1.4
2,897,652 - PGA1_c27810 0.51 -0.2
2,897,654 + PGA1_c27810 0.51 -0.5
2,897,684 - PGA1_c27810 0.54 +1.2
2,897,704 + PGA1_c27810 0.57 +0.7
2,897,722 - PGA1_c27810 0.59 +0.6
2,897,789 + PGA1_c27810 0.67 -0.5
2,897,853 + PGA1_c27810 0.74 -0.7
2,897,853 + PGA1_c27810 0.74 +2.3
2,897,902 + PGA1_c27810 0.80 +0.5
2,897,990 + -1.6
2,897,998 - +1.3
2,898,032 + -0.1
2,898,173 - -0.6
2,898,206 - +1.1
2,898,218 + -0.6
2,898,218 + +1.7
2,898,218 + -0.1
2,898,226 - -1.3
2,898,247 + +0.1
2,898,268 + -0.4
2,898,290 + -1.0
2,898,290 + +0.7
2,898,298 - PGA1_c27820 0.10 +0.3
2,898,325 - PGA1_c27820 0.12 +0.3
2,898,406 - PGA1_c27820 0.18 -0.1
2,898,444 - PGA1_c27820 0.20 +0.3
2,898,444 - PGA1_c27820 0.20 -0.1
2,898,463 - PGA1_c27820 0.22 +1.1
2,898,542 - PGA1_c27820 0.27 -1.8
2,898,611 + PGA1_c27820 0.32 +1.1
2,898,616 + PGA1_c27820 0.32 -1.0
2,898,619 - PGA1_c27820 0.32 -1.5
2,898,626 + PGA1_c27820 0.33 -0.7
2,898,695 + PGA1_c27820 0.38 -1.6
2,898,768 + PGA1_c27820 0.43 -0.4
2,898,832 - PGA1_c27820 0.47 -0.7
2,898,876 + PGA1_c27820 0.50 -0.8
2,898,924 + PGA1_c27820 0.53 -0.7
2,898,934 + PGA1_c27820 0.54 -0.5
2,898,942 - PGA1_c27820 0.54 -0.4
2,899,020 - PGA1_c27820 0.60 -1.7
2,899,047 + PGA1_c27820 0.62 -1.1
2,899,216 + PGA1_c27820 0.73 -0.6
2,899,239 + PGA1_c27820 0.75 -0.5
2,899,258 + PGA1_c27820 0.76 -0.1
2,899,304 + PGA1_c27820 0.79 -0.1
2,899,455 - PGA1_c27820 0.90 -1.8
2,899,580 + -0.4
2,899,588 - +0.1
2,899,588 - -0.2
2,899,600 + -1.1
2,899,631 - +0.0
2,899,637 + -3.0
2,899,640 - +0.7
2,899,645 - +0.2
2,899,645 - -0.2
2,899,645 - +0.9
2,899,645 - +1.6
2,899,650 + -2.8
2,899,690 - PGA1_c27830 0.11 +1.0
2,899,702 + PGA1_c27830 0.12 +0.2
2,899,755 - PGA1_c27830 0.19 -0.4
2,899,771 + PGA1_c27830 0.21 -0.0
2,899,816 + PGA1_c27830 0.27 +0.2
2,899,824 - PGA1_c27830 0.28 +0.1
2,899,996 - PGA1_c27830 0.49 +0.2
2,900,067 + PGA1_c27830 0.59 -0.6
2,900,089 + PGA1_c27830 0.61 +0.6
2,900,089 + PGA1_c27830 0.61 -0.1
2,900,097 - PGA1_c27830 0.62 -0.9
2,900,097 - PGA1_c27830 0.62 +0.2
2,900,133 + PGA1_c27830 0.67 +1.8
2,900,141 - PGA1_c27830 0.68 -0.5
2,900,221 + PGA1_c27830 0.78 -0.8
2,900,232 + PGA1_c27830 0.80 +0.3
2,900,232 + PGA1_c27830 0.80 +0.8
2,900,235 - PGA1_c27830 0.80 -1.1
2,900,270 + PGA1_c27830 0.84 -1.5
2,900,296 - PGA1_c27830 0.88 +0.8
2,900,327 - -1.1
2,900,358 - -1.0
2,900,462 - PGA1_c27840 0.13 -0.5
2,900,462 - PGA1_c27840 0.13 +0.3
2,900,508 + PGA1_c27840 0.25 -0.7
2,900,508 + PGA1_c27840 0.25 +0.1
2,900,508 + PGA1_c27840 0.25 -3.0
2,900,540 + PGA1_c27840 0.33 -1.5

Or see this region's nucleotide sequence