Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27800 and PGA1_c27810 overlap by 4 nucleotides PGA1_c27810 and PGA1_c27820 are separated by 72 nucleotides PGA1_c27820 and PGA1_c27830 overlap by 1 nucleotides PGA1_c27830 and PGA1_c27840 are separated by 16 nucleotides
PGA1_c27800: PGA1_c27800 - L-aspartate oxidase NadB, at 2,895,544 to 2,897,223
_c27800
PGA1_c27810: PGA1_c27810 - nicotinate-nucleotide pyrophosphorylase, at 2,897,220 to 2,898,074
_c27810
PGA1_c27820: PGA1_c27820 - hypothetical protein, at 2,898,147 to 2,899,607
_c27820
PGA1_c27830: PGA1_c27830 - hypothetical protein, at 2,899,607 to 2,900,392
_c27830
PGA1_c27840: PGA1_c27840 - putative polysaccharide biosynthesis protein, at 2,900,409 to 2,900,810
_c27840
Position (kb)
2898
2899
2900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2897.151 kb on + strand at 2897.183 kb on - strand at 2897.275 kb on - strand at 2897.298 kb on - strand at 2897.352 kb on - strand, within PGA1_c27810 at 2897.460 kb on + strand, within PGA1_c27810 at 2897.460 kb on + strand, within PGA1_c27810 at 2897.465 kb on + strand, within PGA1_c27810 at 2897.473 kb on - strand, within PGA1_c27810 at 2897.644 kb on + strand, within PGA1_c27810 at 2897.644 kb on + strand, within PGA1_c27810 at 2897.644 kb on + strand, within PGA1_c27810 at 2897.652 kb on - strand, within PGA1_c27810 at 2897.652 kb on - strand, within PGA1_c27810 at 2897.652 kb on - strand, within PGA1_c27810 at 2897.654 kb on + strand, within PGA1_c27810 at 2897.684 kb on - strand, within PGA1_c27810 at 2897.704 kb on + strand, within PGA1_c27810 at 2897.722 kb on - strand, within PGA1_c27810 at 2897.789 kb on + strand, within PGA1_c27810 at 2897.853 kb on + strand, within PGA1_c27810 at 2897.853 kb on + strand, within PGA1_c27810 at 2897.902 kb on + strand, within PGA1_c27810 at 2897.990 kb on + strand at 2897.998 kb on - strand at 2898.032 kb on + strand at 2898.173 kb on - strand at 2898.206 kb on - strand at 2898.218 kb on + strand at 2898.218 kb on + strand at 2898.218 kb on + strand at 2898.226 kb on - strand at 2898.247 kb on + strand at 2898.268 kb on + strand at 2898.290 kb on + strand at 2898.290 kb on + strand at 2898.298 kb on - strand, within PGA1_c27820 at 2898.325 kb on - strand, within PGA1_c27820 at 2898.406 kb on - strand, within PGA1_c27820 at 2898.444 kb on - strand, within PGA1_c27820 at 2898.444 kb on - strand, within PGA1_c27820 at 2898.463 kb on - strand, within PGA1_c27820 at 2898.542 kb on - strand, within PGA1_c27820 at 2898.611 kb on + strand, within PGA1_c27820 at 2898.616 kb on + strand, within PGA1_c27820 at 2898.619 kb on - strand, within PGA1_c27820 at 2898.626 kb on + strand, within PGA1_c27820 at 2898.695 kb on + strand, within PGA1_c27820 at 2898.768 kb on + strand, within PGA1_c27820 at 2898.832 kb on - strand, within PGA1_c27820 at 2898.876 kb on + strand, within PGA1_c27820 at 2898.924 kb on + strand, within PGA1_c27820 at 2898.934 kb on + strand, within PGA1_c27820 at 2898.942 kb on - strand, within PGA1_c27820 at 2899.020 kb on - strand, within PGA1_c27820 at 2899.047 kb on + strand, within PGA1_c27820 at 2899.216 kb on + strand, within PGA1_c27820 at 2899.239 kb on + strand, within PGA1_c27820 at 2899.258 kb on + strand, within PGA1_c27820 at 2899.304 kb on + strand, within PGA1_c27820 at 2899.455 kb on - strand, within PGA1_c27820 at 2899.580 kb on + strand at 2899.588 kb on - strand at 2899.588 kb on - strand at 2899.600 kb on + strand at 2899.631 kb on - strand at 2899.637 kb on + strand at 2899.640 kb on - strand at 2899.645 kb on - strand at 2899.645 kb on - strand at 2899.645 kb on - strand at 2899.645 kb on - strand at 2899.650 kb on + strand at 2899.690 kb on - strand, within PGA1_c27830 at 2899.702 kb on + strand, within PGA1_c27830 at 2899.755 kb on - strand, within PGA1_c27830 at 2899.771 kb on + strand, within PGA1_c27830 at 2899.816 kb on + strand, within PGA1_c27830 at 2899.824 kb on - strand, within PGA1_c27830 at 2899.996 kb on - strand, within PGA1_c27830 at 2900.067 kb on + strand, within PGA1_c27830 at 2900.089 kb on + strand, within PGA1_c27830 at 2900.089 kb on + strand, within PGA1_c27830 at 2900.097 kb on - strand, within PGA1_c27830 at 2900.097 kb on - strand, within PGA1_c27830 at 2900.133 kb on + strand, within PGA1_c27830 at 2900.141 kb on - strand, within PGA1_c27830 at 2900.221 kb on + strand, within PGA1_c27830 at 2900.232 kb on + strand, within PGA1_c27830 at 2900.232 kb on + strand, within PGA1_c27830 at 2900.235 kb on - strand, within PGA1_c27830 at 2900.270 kb on + strand, within PGA1_c27830 at 2900.296 kb on - strand, within PGA1_c27830 at 2900.327 kb on - strand at 2900.358 kb on - strand at 2900.462 kb on - strand, within PGA1_c27840 at 2900.462 kb on - strand, within PGA1_c27840 at 2900.508 kb on + strand, within PGA1_c27840 at 2900.508 kb on + strand, within PGA1_c27840 at 2900.508 kb on + strand, within PGA1_c27840 at 2900.540 kb on + strand, within PGA1_c27840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 2,897,151 + -0.1 2,897,183 - -0.0 2,897,275 - -0.3 2,897,298 - -1.3 2,897,352 - PGA1_c27810 0.15 +0.4 2,897,460 + PGA1_c27810 0.28 -0.3 2,897,460 + PGA1_c27810 0.28 -1.0 2,897,465 + PGA1_c27810 0.29 +0.7 2,897,473 - PGA1_c27810 0.30 -0.1 2,897,644 + PGA1_c27810 0.50 -0.0 2,897,644 + PGA1_c27810 0.50 -0.5 2,897,644 + PGA1_c27810 0.50 +0.7 2,897,652 - PGA1_c27810 0.51 -1.3 2,897,652 - PGA1_c27810 0.51 -1.4 2,897,652 - PGA1_c27810 0.51 -0.2 2,897,654 + PGA1_c27810 0.51 -0.5 2,897,684 - PGA1_c27810 0.54 +1.2 2,897,704 + PGA1_c27810 0.57 +0.7 2,897,722 - PGA1_c27810 0.59 +0.6 2,897,789 + PGA1_c27810 0.67 -0.5 2,897,853 + PGA1_c27810 0.74 -0.7 2,897,853 + PGA1_c27810 0.74 +2.3 2,897,902 + PGA1_c27810 0.80 +0.5 2,897,990 + -1.6 2,897,998 - +1.3 2,898,032 + -0.1 2,898,173 - -0.6 2,898,206 - +1.1 2,898,218 + -0.6 2,898,218 + +1.7 2,898,218 + -0.1 2,898,226 - -1.3 2,898,247 + +0.1 2,898,268 + -0.4 2,898,290 + -1.0 2,898,290 + +0.7 2,898,298 - PGA1_c27820 0.10 +0.3 2,898,325 - PGA1_c27820 0.12 +0.3 2,898,406 - PGA1_c27820 0.18 -0.1 2,898,444 - PGA1_c27820 0.20 +0.3 2,898,444 - PGA1_c27820 0.20 -0.1 2,898,463 - PGA1_c27820 0.22 +1.1 2,898,542 - PGA1_c27820 0.27 -1.8 2,898,611 + PGA1_c27820 0.32 +1.1 2,898,616 + PGA1_c27820 0.32 -1.0 2,898,619 - PGA1_c27820 0.32 -1.5 2,898,626 + PGA1_c27820 0.33 -0.7 2,898,695 + PGA1_c27820 0.38 -1.6 2,898,768 + PGA1_c27820 0.43 -0.4 2,898,832 - PGA1_c27820 0.47 -0.7 2,898,876 + PGA1_c27820 0.50 -0.8 2,898,924 + PGA1_c27820 0.53 -0.7 2,898,934 + PGA1_c27820 0.54 -0.5 2,898,942 - PGA1_c27820 0.54 -0.4 2,899,020 - PGA1_c27820 0.60 -1.7 2,899,047 + PGA1_c27820 0.62 -1.1 2,899,216 + PGA1_c27820 0.73 -0.6 2,899,239 + PGA1_c27820 0.75 -0.5 2,899,258 + PGA1_c27820 0.76 -0.1 2,899,304 + PGA1_c27820 0.79 -0.1 2,899,455 - PGA1_c27820 0.90 -1.8 2,899,580 + -0.4 2,899,588 - +0.1 2,899,588 - -0.2 2,899,600 + -1.1 2,899,631 - +0.0 2,899,637 + -3.0 2,899,640 - +0.7 2,899,645 - +0.2 2,899,645 - -0.2 2,899,645 - +0.9 2,899,645 - +1.6 2,899,650 + -2.8 2,899,690 - PGA1_c27830 0.11 +1.0 2,899,702 + PGA1_c27830 0.12 +0.2 2,899,755 - PGA1_c27830 0.19 -0.4 2,899,771 + PGA1_c27830 0.21 -0.0 2,899,816 + PGA1_c27830 0.27 +0.2 2,899,824 - PGA1_c27830 0.28 +0.1 2,899,996 - PGA1_c27830 0.49 +0.2 2,900,067 + PGA1_c27830 0.59 -0.6 2,900,089 + PGA1_c27830 0.61 +0.6 2,900,089 + PGA1_c27830 0.61 -0.1 2,900,097 - PGA1_c27830 0.62 -0.9 2,900,097 - PGA1_c27830 0.62 +0.2 2,900,133 + PGA1_c27830 0.67 +1.8 2,900,141 - PGA1_c27830 0.68 -0.5 2,900,221 + PGA1_c27830 0.78 -0.8 2,900,232 + PGA1_c27830 0.80 +0.3 2,900,232 + PGA1_c27830 0.80 +0.8 2,900,235 - PGA1_c27830 0.80 -1.1 2,900,270 + PGA1_c27830 0.84 -1.5 2,900,296 - PGA1_c27830 0.88 +0.8 2,900,327 - -1.1 2,900,358 - -1.0 2,900,462 - PGA1_c27840 0.13 -0.5 2,900,462 - PGA1_c27840 0.13 +0.3 2,900,508 + PGA1_c27840 0.25 -0.7 2,900,508 + PGA1_c27840 0.25 +0.1 2,900,508 + PGA1_c27840 0.25 -3.0 2,900,540 + PGA1_c27840 0.33 -1.5
Or see this region's nucleotide sequence