Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27590

Experiment: m.b. Zinc 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27570 and PGA1_c27580 are separated by 1 nucleotidesPGA1_c27580 and PGA1_c27590 overlap by 4 nucleotidesPGA1_c27590 and PGA1_c27600 are separated by 133 nucleotides PGA1_c27570: PGA1_c27570 - hypothetical protein, at 2,872,033 to 2,872,578 _c27570 PGA1_c27580: PGA1_c27580 - putative short chain dehydrogenase, at 2,872,580 to 2,873,311 _c27580 PGA1_c27590: PGA1_c27590 - saccharopine dehydrogenase-like protein, at 2,873,308 to 2,874,033 _c27590 PGA1_c27600: PGA1_c27600 - putative signal transduction histidine kinase, at 2,874,167 to 2,876,137 _c27600 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -2 -1 0 1at 2872.387 kb on - strand, within PGA1_c27570at 2872.506 kb on - strand, within PGA1_c27570at 2872.506 kb on - strand, within PGA1_c27570at 2872.506 kb on - strand, within PGA1_c27570at 2872.516 kb on - strand, within PGA1_c27570at 2872.603 kb on - strandat 2872.622 kb on + strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.630 kb on - strandat 2872.705 kb on + strand, within PGA1_c27580at 2872.751 kb on - strand, within PGA1_c27580at 2872.761 kb on - strand, within PGA1_c27580at 2872.761 kb on - strand, within PGA1_c27580at 2872.798 kb on + strand, within PGA1_c27580at 2872.806 kb on - strand, within PGA1_c27580at 2872.809 kb on - strand, within PGA1_c27580at 2872.834 kb on + strand, within PGA1_c27580at 2872.849 kb on + strand, within PGA1_c27580at 2872.849 kb on + strand, within PGA1_c27580at 2872.856 kb on - strand, within PGA1_c27580at 2872.874 kb on - strand, within PGA1_c27580at 2872.874 kb on - strand, within PGA1_c27580at 2872.884 kb on - strand, within PGA1_c27580at 2872.884 kb on - strand, within PGA1_c27580at 2872.917 kb on + strand, within PGA1_c27580at 2872.925 kb on - strand, within PGA1_c27580at 2872.925 kb on - strand, within PGA1_c27580at 2872.951 kb on + strand, within PGA1_c27580at 2873.009 kb on + strand, within PGA1_c27580at 2873.017 kb on - strand, within PGA1_c27580at 2873.017 kb on - strand, within PGA1_c27580at 2873.053 kb on + strand, within PGA1_c27580at 2873.061 kb on - strand, within PGA1_c27580at 2873.063 kb on + strand, within PGA1_c27580at 2873.085 kb on + strand, within PGA1_c27580at 2873.093 kb on - strand, within PGA1_c27580at 2873.095 kb on + strand, within PGA1_c27580at 2873.118 kb on - strand, within PGA1_c27580at 2873.124 kb on - strand, within PGA1_c27580at 2873.163 kb on + strand, within PGA1_c27580at 2873.163 kb on - strand, within PGA1_c27580at 2873.185 kb on - strand, within PGA1_c27580at 2873.301 kb on - strandat 2873.302 kb on + strandat 2873.317 kb on + strandat 2873.317 kb on + strandat 2873.342 kb on + strandat 2873.450 kb on + strand, within PGA1_c27590at 2873.493 kb on + strand, within PGA1_c27590at 2873.501 kb on - strand, within PGA1_c27590at 2873.510 kb on + strand, within PGA1_c27590at 2873.553 kb on + strand, within PGA1_c27590at 2873.569 kb on + strand, within PGA1_c27590at 2873.577 kb on - strand, within PGA1_c27590at 2873.577 kb on - strand, within PGA1_c27590at 2873.604 kb on + strand, within PGA1_c27590at 2873.605 kb on + strand, within PGA1_c27590at 2873.648 kb on + strand, within PGA1_c27590at 2873.656 kb on - strand, within PGA1_c27590at 2873.657 kb on - strand, within PGA1_c27590at 2873.686 kb on + strand, within PGA1_c27590at 2873.701 kb on - strand, within PGA1_c27590at 2873.732 kb on - strand, within PGA1_c27590at 2873.764 kb on + strand, within PGA1_c27590at 2873.822 kb on - strand, within PGA1_c27590at 2873.862 kb on - strand, within PGA1_c27590at 2873.870 kb on - strand, within PGA1_c27590at 2873.925 kb on + strand, within PGA1_c27590at 2873.928 kb on - strand, within PGA1_c27590at 2873.929 kb on + strand, within PGA1_c27590at 2873.933 kb on - strand, within PGA1_c27590at 2873.933 kb on - strand, within PGA1_c27590at 2873.953 kb on - strand, within PGA1_c27590at 2873.976 kb on + strandat 2873.976 kb on + strandat 2873.976 kb on + strandat 2874.059 kb on - strandat 2874.059 kb on - strandat 2874.061 kb on + strandat 2874.113 kb on + strandat 2874.113 kb on + strandat 2874.113 kb on - strandat 2874.119 kb on + strandat 2874.138 kb on - strandat 2874.147 kb on + strandat 2874.186 kb on + strandat 2874.186 kb on + strandat 2874.240 kb on - strandat 2874.278 kb on - strandat 2874.365 kb on + strand, within PGA1_c27600at 2874.394 kb on + strand, within PGA1_c27600at 2874.394 kb on + strand, within PGA1_c27600at 2874.492 kb on - strand, within PGA1_c27600at 2874.518 kb on + strand, within PGA1_c27600at 2874.518 kb on + strand, within PGA1_c27600at 2874.542 kb on + strand, within PGA1_c27600at 2874.542 kb on + strand, within PGA1_c27600at 2874.602 kb on - strand, within PGA1_c27600at 2874.602 kb on - strand, within PGA1_c27600at 2874.701 kb on + strand, within PGA1_c27600at 2874.754 kb on - strand, within PGA1_c27600at 2874.826 kb on + strand, within PGA1_c27600at 2874.880 kb on + strand, within PGA1_c27600at 2874.888 kb on - strand, within PGA1_c27600at 2874.888 kb on - strand, within PGA1_c27600at 2874.898 kb on - strand, within PGA1_c27600at 2874.920 kb on + strand, within PGA1_c27600at 2874.935 kb on + strand, within PGA1_c27600at 2874.952 kb on + strand, within PGA1_c27600at 2874.952 kb on + strand, within PGA1_c27600at 2874.960 kb on - strand, within PGA1_c27600at 2874.960 kb on - strand, within PGA1_c27600at 2874.960 kb on - strand, within PGA1_c27600at 2874.974 kb on + strand, within PGA1_c27600at 2874.992 kb on + strand, within PGA1_c27600at 2875.010 kb on - strand, within PGA1_c27600

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM
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2,872,387 - PGA1_c27570 0.65 -0.7
2,872,506 - PGA1_c27570 0.87 -0.6
2,872,506 - PGA1_c27570 0.87 +0.4
2,872,506 - PGA1_c27570 0.87 -0.0
2,872,516 - PGA1_c27570 0.88 -0.9
2,872,603 - -0.8
2,872,622 + -0.5
2,872,630 - -0.6
2,872,630 - -0.1
2,872,630 - -0.3
2,872,630 - +0.7
2,872,630 - +0.4
2,872,630 - -1.2
2,872,630 - +0.8
2,872,705 + PGA1_c27580 0.17 -0.6
2,872,751 - PGA1_c27580 0.23 -1.6
2,872,761 - PGA1_c27580 0.25 +0.5
2,872,761 - PGA1_c27580 0.25 -0.8
2,872,798 + PGA1_c27580 0.30 -0.8
2,872,806 - PGA1_c27580 0.31 -1.5
2,872,809 - PGA1_c27580 0.31 -0.8
2,872,834 + PGA1_c27580 0.35 +1.0
2,872,849 + PGA1_c27580 0.37 -1.4
2,872,849 + PGA1_c27580 0.37 +0.4
2,872,856 - PGA1_c27580 0.38 -0.1
2,872,874 - PGA1_c27580 0.40 -0.1
2,872,874 - PGA1_c27580 0.40 +0.0
2,872,884 - PGA1_c27580 0.42 -0.2
2,872,884 - PGA1_c27580 0.42 -0.1
2,872,917 + PGA1_c27580 0.46 +0.5
2,872,925 - PGA1_c27580 0.47 +0.5
2,872,925 - PGA1_c27580 0.47 -0.5
2,872,951 + PGA1_c27580 0.51 -0.8
2,873,009 + PGA1_c27580 0.59 -0.2
2,873,017 - PGA1_c27580 0.60 -0.4
2,873,017 - PGA1_c27580 0.60 +0.0
2,873,053 + PGA1_c27580 0.65 -2.2
2,873,061 - PGA1_c27580 0.66 +0.1
2,873,063 + PGA1_c27580 0.66 +0.0
2,873,085 + PGA1_c27580 0.69 -2.1
2,873,093 - PGA1_c27580 0.70 -1.2
2,873,095 + PGA1_c27580 0.70 -0.1
2,873,118 - PGA1_c27580 0.73 -0.1
2,873,124 - PGA1_c27580 0.74 +1.2
2,873,163 + PGA1_c27580 0.80 +0.4
2,873,163 - PGA1_c27580 0.80 -1.7
2,873,185 - PGA1_c27580 0.83 +0.2
2,873,301 - -0.9
2,873,302 + -0.1
2,873,317 + -1.3
2,873,317 + -1.6
2,873,342 + -0.3
2,873,450 + PGA1_c27590 0.20 -1.1
2,873,493 + PGA1_c27590 0.25 -0.4
2,873,501 - PGA1_c27590 0.27 -2.0
2,873,510 + PGA1_c27590 0.28 +1.2
2,873,553 + PGA1_c27590 0.34 -0.6
2,873,569 + PGA1_c27590 0.36 +0.6
2,873,577 - PGA1_c27590 0.37 -0.3
2,873,577 - PGA1_c27590 0.37 -0.9
2,873,604 + PGA1_c27590 0.41 -0.9
2,873,605 + PGA1_c27590 0.41 +0.1
2,873,648 + PGA1_c27590 0.47 +0.6
2,873,656 - PGA1_c27590 0.48 -0.3
2,873,657 - PGA1_c27590 0.48 -0.6
2,873,686 + PGA1_c27590 0.52 -0.8
2,873,701 - PGA1_c27590 0.54 -0.0
2,873,732 - PGA1_c27590 0.58 -0.9
2,873,764 + PGA1_c27590 0.63 -0.5
2,873,822 - PGA1_c27590 0.71 -0.2
2,873,862 - PGA1_c27590 0.76 +0.3
2,873,870 - PGA1_c27590 0.77 -0.6
2,873,925 + PGA1_c27590 0.85 +0.4
2,873,928 - PGA1_c27590 0.85 -1.0
2,873,929 + PGA1_c27590 0.86 -0.8
2,873,933 - PGA1_c27590 0.86 +1.4
2,873,933 - PGA1_c27590 0.86 -1.0
2,873,953 - PGA1_c27590 0.89 -0.2
2,873,976 + -0.7
2,873,976 + +0.5
2,873,976 + +1.0
2,874,059 - +0.2
2,874,059 - -2.1
2,874,061 + +0.9
2,874,113 + -0.2
2,874,113 + -0.4
2,874,113 - +0.2
2,874,119 + -0.2
2,874,138 - -0.2
2,874,147 + -0.5
2,874,186 + -0.0
2,874,186 + -0.6
2,874,240 - -0.6
2,874,278 - -0.2
2,874,365 + PGA1_c27600 0.10 -0.7
2,874,394 + PGA1_c27600 0.12 +0.5
2,874,394 + PGA1_c27600 0.12 -0.6
2,874,492 - PGA1_c27600 0.16 -0.5
2,874,518 + PGA1_c27600 0.18 -1.1
2,874,518 + PGA1_c27600 0.18 +0.4
2,874,542 + PGA1_c27600 0.19 -0.5
2,874,542 + PGA1_c27600 0.19 -0.0
2,874,602 - PGA1_c27600 0.22 +0.2
2,874,602 - PGA1_c27600 0.22 +0.7
2,874,701 + PGA1_c27600 0.27 -1.2
2,874,754 - PGA1_c27600 0.30 -1.4
2,874,826 + PGA1_c27600 0.33 -1.1
2,874,880 + PGA1_c27600 0.36 -0.7
2,874,888 - PGA1_c27600 0.37 +0.9
2,874,888 - PGA1_c27600 0.37 +0.3
2,874,898 - PGA1_c27600 0.37 -0.6
2,874,920 + PGA1_c27600 0.38 -0.1
2,874,935 + PGA1_c27600 0.39 -0.2
2,874,952 + PGA1_c27600 0.40 -0.8
2,874,952 + PGA1_c27600 0.40 +1.4
2,874,960 - PGA1_c27600 0.40 -1.5
2,874,960 - PGA1_c27600 0.40 +0.9
2,874,960 - PGA1_c27600 0.40 +1.0
2,874,974 + PGA1_c27600 0.41 -0.2
2,874,992 + PGA1_c27600 0.42 -0.2
2,875,010 - PGA1_c27600 0.43 +0.3

Or see this region's nucleotide sequence