Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27570 and PGA1_c27580 are separated by 1 nucleotides PGA1_c27580 and PGA1_c27590 overlap by 4 nucleotides PGA1_c27590 and PGA1_c27600 are separated by 133 nucleotides
PGA1_c27570: PGA1_c27570 - hypothetical protein, at 2,872,033 to 2,872,578
_c27570
PGA1_c27580: PGA1_c27580 - putative short chain dehydrogenase, at 2,872,580 to 2,873,311
_c27580
PGA1_c27590: PGA1_c27590 - saccharopine dehydrogenase-like protein, at 2,873,308 to 2,874,033
_c27590
PGA1_c27600: PGA1_c27600 - putative signal transduction histidine kinase, at 2,874,167 to 2,876,137
_c27600
Position (kb)
2873
2874
2875 Strain fitness (log2 ratio)
-2
-1
0
1 at 2872.387 kb on - strand, within PGA1_c27570 at 2872.506 kb on - strand, within PGA1_c27570 at 2872.506 kb on - strand, within PGA1_c27570 at 2872.506 kb on - strand, within PGA1_c27570 at 2872.516 kb on - strand, within PGA1_c27570 at 2872.603 kb on - strand at 2872.622 kb on + strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.630 kb on - strand at 2872.705 kb on + strand, within PGA1_c27580 at 2872.751 kb on - strand, within PGA1_c27580 at 2872.761 kb on - strand, within PGA1_c27580 at 2872.761 kb on - strand, within PGA1_c27580 at 2872.798 kb on + strand, within PGA1_c27580 at 2872.806 kb on - strand, within PGA1_c27580 at 2872.809 kb on - strand, within PGA1_c27580 at 2872.834 kb on + strand, within PGA1_c27580 at 2872.849 kb on + strand, within PGA1_c27580 at 2872.849 kb on + strand, within PGA1_c27580 at 2872.856 kb on - strand, within PGA1_c27580 at 2872.874 kb on - strand, within PGA1_c27580 at 2872.874 kb on - strand, within PGA1_c27580 at 2872.884 kb on - strand, within PGA1_c27580 at 2872.884 kb on - strand, within PGA1_c27580 at 2872.917 kb on + strand, within PGA1_c27580 at 2872.925 kb on - strand, within PGA1_c27580 at 2872.925 kb on - strand, within PGA1_c27580 at 2872.951 kb on + strand, within PGA1_c27580 at 2873.009 kb on + strand, within PGA1_c27580 at 2873.017 kb on - strand, within PGA1_c27580 at 2873.017 kb on - strand, within PGA1_c27580 at 2873.053 kb on + strand, within PGA1_c27580 at 2873.061 kb on - strand, within PGA1_c27580 at 2873.063 kb on + strand, within PGA1_c27580 at 2873.085 kb on + strand, within PGA1_c27580 at 2873.093 kb on - strand, within PGA1_c27580 at 2873.095 kb on + strand, within PGA1_c27580 at 2873.118 kb on - strand, within PGA1_c27580 at 2873.124 kb on - strand, within PGA1_c27580 at 2873.163 kb on + strand, within PGA1_c27580 at 2873.163 kb on - strand, within PGA1_c27580 at 2873.185 kb on - strand, within PGA1_c27580 at 2873.301 kb on - strand at 2873.302 kb on + strand at 2873.317 kb on + strand at 2873.317 kb on + strand at 2873.342 kb on + strand at 2873.450 kb on + strand, within PGA1_c27590 at 2873.493 kb on + strand, within PGA1_c27590 at 2873.501 kb on - strand, within PGA1_c27590 at 2873.510 kb on + strand, within PGA1_c27590 at 2873.553 kb on + strand, within PGA1_c27590 at 2873.569 kb on + strand, within PGA1_c27590 at 2873.577 kb on - strand, within PGA1_c27590 at 2873.577 kb on - strand, within PGA1_c27590 at 2873.604 kb on + strand, within PGA1_c27590 at 2873.605 kb on + strand, within PGA1_c27590 at 2873.648 kb on + strand, within PGA1_c27590 at 2873.656 kb on - strand, within PGA1_c27590 at 2873.657 kb on - strand, within PGA1_c27590 at 2873.686 kb on + strand, within PGA1_c27590 at 2873.701 kb on - strand, within PGA1_c27590 at 2873.732 kb on - strand, within PGA1_c27590 at 2873.764 kb on + strand, within PGA1_c27590 at 2873.822 kb on - strand, within PGA1_c27590 at 2873.862 kb on - strand, within PGA1_c27590 at 2873.870 kb on - strand, within PGA1_c27590 at 2873.925 kb on + strand, within PGA1_c27590 at 2873.928 kb on - strand, within PGA1_c27590 at 2873.929 kb on + strand, within PGA1_c27590 at 2873.933 kb on - strand, within PGA1_c27590 at 2873.933 kb on - strand, within PGA1_c27590 at 2873.953 kb on - strand, within PGA1_c27590 at 2873.976 kb on + strand at 2873.976 kb on + strand at 2873.976 kb on + strand at 2874.059 kb on - strand at 2874.059 kb on - strand at 2874.061 kb on + strand at 2874.113 kb on + strand at 2874.113 kb on + strand at 2874.113 kb on - strand at 2874.119 kb on + strand at 2874.138 kb on - strand at 2874.147 kb on + strand at 2874.186 kb on + strand at 2874.186 kb on + strand at 2874.240 kb on - strand at 2874.278 kb on - strand at 2874.365 kb on + strand, within PGA1_c27600 at 2874.394 kb on + strand, within PGA1_c27600 at 2874.394 kb on + strand, within PGA1_c27600 at 2874.492 kb on - strand, within PGA1_c27600 at 2874.518 kb on + strand, within PGA1_c27600 at 2874.518 kb on + strand, within PGA1_c27600 at 2874.542 kb on + strand, within PGA1_c27600 at 2874.542 kb on + strand, within PGA1_c27600 at 2874.602 kb on - strand, within PGA1_c27600 at 2874.602 kb on - strand, within PGA1_c27600 at 2874.701 kb on + strand, within PGA1_c27600 at 2874.754 kb on - strand, within PGA1_c27600 at 2874.826 kb on + strand, within PGA1_c27600 at 2874.880 kb on + strand, within PGA1_c27600 at 2874.888 kb on - strand, within PGA1_c27600 at 2874.888 kb on - strand, within PGA1_c27600 at 2874.898 kb on - strand, within PGA1_c27600 at 2874.920 kb on + strand, within PGA1_c27600 at 2874.935 kb on + strand, within PGA1_c27600 at 2874.952 kb on + strand, within PGA1_c27600 at 2874.952 kb on + strand, within PGA1_c27600 at 2874.960 kb on - strand, within PGA1_c27600 at 2874.960 kb on - strand, within PGA1_c27600 at 2874.960 kb on - strand, within PGA1_c27600 at 2874.974 kb on + strand, within PGA1_c27600 at 2874.992 kb on + strand, within PGA1_c27600 at 2875.010 kb on - strand, within PGA1_c27600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 2,872,387 - PGA1_c27570 0.65 -0.7 2,872,506 - PGA1_c27570 0.87 -0.6 2,872,506 - PGA1_c27570 0.87 +0.4 2,872,506 - PGA1_c27570 0.87 -0.0 2,872,516 - PGA1_c27570 0.88 -0.9 2,872,603 - -0.8 2,872,622 + -0.5 2,872,630 - -0.6 2,872,630 - -0.1 2,872,630 - -0.3 2,872,630 - +0.7 2,872,630 - +0.4 2,872,630 - -1.2 2,872,630 - +0.8 2,872,705 + PGA1_c27580 0.17 -0.6 2,872,751 - PGA1_c27580 0.23 -1.6 2,872,761 - PGA1_c27580 0.25 +0.5 2,872,761 - PGA1_c27580 0.25 -0.8 2,872,798 + PGA1_c27580 0.30 -0.8 2,872,806 - PGA1_c27580 0.31 -1.5 2,872,809 - PGA1_c27580 0.31 -0.8 2,872,834 + PGA1_c27580 0.35 +1.0 2,872,849 + PGA1_c27580 0.37 -1.4 2,872,849 + PGA1_c27580 0.37 +0.4 2,872,856 - PGA1_c27580 0.38 -0.1 2,872,874 - PGA1_c27580 0.40 -0.1 2,872,874 - PGA1_c27580 0.40 +0.0 2,872,884 - PGA1_c27580 0.42 -0.2 2,872,884 - PGA1_c27580 0.42 -0.1 2,872,917 + PGA1_c27580 0.46 +0.5 2,872,925 - PGA1_c27580 0.47 +0.5 2,872,925 - PGA1_c27580 0.47 -0.5 2,872,951 + PGA1_c27580 0.51 -0.8 2,873,009 + PGA1_c27580 0.59 -0.2 2,873,017 - PGA1_c27580 0.60 -0.4 2,873,017 - PGA1_c27580 0.60 +0.0 2,873,053 + PGA1_c27580 0.65 -2.2 2,873,061 - PGA1_c27580 0.66 +0.1 2,873,063 + PGA1_c27580 0.66 +0.0 2,873,085 + PGA1_c27580 0.69 -2.1 2,873,093 - PGA1_c27580 0.70 -1.2 2,873,095 + PGA1_c27580 0.70 -0.1 2,873,118 - PGA1_c27580 0.73 -0.1 2,873,124 - PGA1_c27580 0.74 +1.2 2,873,163 + PGA1_c27580 0.80 +0.4 2,873,163 - PGA1_c27580 0.80 -1.7 2,873,185 - PGA1_c27580 0.83 +0.2 2,873,301 - -0.9 2,873,302 + -0.1 2,873,317 + -1.3 2,873,317 + -1.6 2,873,342 + -0.3 2,873,450 + PGA1_c27590 0.20 -1.1 2,873,493 + PGA1_c27590 0.25 -0.4 2,873,501 - PGA1_c27590 0.27 -2.0 2,873,510 + PGA1_c27590 0.28 +1.2 2,873,553 + PGA1_c27590 0.34 -0.6 2,873,569 + PGA1_c27590 0.36 +0.6 2,873,577 - PGA1_c27590 0.37 -0.3 2,873,577 - PGA1_c27590 0.37 -0.9 2,873,604 + PGA1_c27590 0.41 -0.9 2,873,605 + PGA1_c27590 0.41 +0.1 2,873,648 + PGA1_c27590 0.47 +0.6 2,873,656 - PGA1_c27590 0.48 -0.3 2,873,657 - PGA1_c27590 0.48 -0.6 2,873,686 + PGA1_c27590 0.52 -0.8 2,873,701 - PGA1_c27590 0.54 -0.0 2,873,732 - PGA1_c27590 0.58 -0.9 2,873,764 + PGA1_c27590 0.63 -0.5 2,873,822 - PGA1_c27590 0.71 -0.2 2,873,862 - PGA1_c27590 0.76 +0.3 2,873,870 - PGA1_c27590 0.77 -0.6 2,873,925 + PGA1_c27590 0.85 +0.4 2,873,928 - PGA1_c27590 0.85 -1.0 2,873,929 + PGA1_c27590 0.86 -0.8 2,873,933 - PGA1_c27590 0.86 +1.4 2,873,933 - PGA1_c27590 0.86 -1.0 2,873,953 - PGA1_c27590 0.89 -0.2 2,873,976 + -0.7 2,873,976 + +0.5 2,873,976 + +1.0 2,874,059 - +0.2 2,874,059 - -2.1 2,874,061 + +0.9 2,874,113 + -0.2 2,874,113 + -0.4 2,874,113 - +0.2 2,874,119 + -0.2 2,874,138 - -0.2 2,874,147 + -0.5 2,874,186 + -0.0 2,874,186 + -0.6 2,874,240 - -0.6 2,874,278 - -0.2 2,874,365 + PGA1_c27600 0.10 -0.7 2,874,394 + PGA1_c27600 0.12 +0.5 2,874,394 + PGA1_c27600 0.12 -0.6 2,874,492 - PGA1_c27600 0.16 -0.5 2,874,518 + PGA1_c27600 0.18 -1.1 2,874,518 + PGA1_c27600 0.18 +0.4 2,874,542 + PGA1_c27600 0.19 -0.5 2,874,542 + PGA1_c27600 0.19 -0.0 2,874,602 - PGA1_c27600 0.22 +0.2 2,874,602 - PGA1_c27600 0.22 +0.7 2,874,701 + PGA1_c27600 0.27 -1.2 2,874,754 - PGA1_c27600 0.30 -1.4 2,874,826 + PGA1_c27600 0.33 -1.1 2,874,880 + PGA1_c27600 0.36 -0.7 2,874,888 - PGA1_c27600 0.37 +0.9 2,874,888 - PGA1_c27600 0.37 +0.3 2,874,898 - PGA1_c27600 0.37 -0.6 2,874,920 + PGA1_c27600 0.38 -0.1 2,874,935 + PGA1_c27600 0.39 -0.2 2,874,952 + PGA1_c27600 0.40 -0.8 2,874,952 + PGA1_c27600 0.40 +1.4 2,874,960 - PGA1_c27600 0.40 -1.5 2,874,960 - PGA1_c27600 0.40 +0.9 2,874,960 - PGA1_c27600 0.40 +1.0 2,874,974 + PGA1_c27600 0.41 -0.2 2,874,992 + PGA1_c27600 0.42 -0.2 2,875,010 - PGA1_c27600 0.43 +0.3
Or see this region's nucleotide sequence