Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02280 and PGA1_c02290 are separated by 2 nucleotides PGA1_c02290 and PGA1_c02300 overlap by 8 nucleotides PGA1_c02300 and PGA1_c02310 overlap by 4 nucleotides
PGA1_c02280: PGA1_c02280 - hypothetical protein, at 204,727 to 205,677
_c02280
PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477
_c02290
PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246
_c02300
PGA1_c02310: PGA1_c02310 - putative pyridoxal-phosphate-dependent aminotransferase, at 207,243 to 208,439
_c02310
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.749 kb on - strand at 204.794 kb on + strand at 204.803 kb on + strand at 204.811 kb on - strand at 204.821 kb on + strand at 204.845 kb on + strand, within PGA1_c02280 at 204.848 kb on - strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.887 kb on - strand, within PGA1_c02280 at 204.897 kb on - strand, within PGA1_c02280 at 204.908 kb on - strand, within PGA1_c02280 at 204.918 kb on - strand, within PGA1_c02280 at 204.939 kb on - strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.989 kb on + strand, within PGA1_c02280 at 204.994 kb on + strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.999 kb on + strand, within PGA1_c02280 at 205.017 kb on + strand, within PGA1_c02280 at 205.025 kb on - strand, within PGA1_c02280 at 205.059 kb on - strand, within PGA1_c02280 at 205.073 kb on - strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.131 kb on - strand, within PGA1_c02280 at 205.153 kb on + strand, within PGA1_c02280 at 205.208 kb on - strand, within PGA1_c02280 at 205.229 kb on + strand, within PGA1_c02280 at 205.247 kb on + strand, within PGA1_c02280 at 205.247 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.285 kb on + strand, within PGA1_c02280 at 205.290 kb on + strand, within PGA1_c02280 at 205.293 kb on - strand, within PGA1_c02280 at 205.294 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.362 kb on + strand, within PGA1_c02280 at 205.370 kb on - strand, within PGA1_c02280 at 205.376 kb on - strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.450 kb on + strand, within PGA1_c02280 at 205.455 kb on + strand, within PGA1_c02280 at 205.458 kb on - strand, within PGA1_c02280 at 205.463 kb on - strand, within PGA1_c02280 at 205.477 kb on + strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.485 kb on - strand, within PGA1_c02280 at 205.491 kb on + strand, within PGA1_c02280 at 205.548 kb on - strand, within PGA1_c02280 at 205.549 kb on - strand, within PGA1_c02280 at 205.578 kb on + strand, within PGA1_c02280 at 205.601 kb on + strand at 205.638 kb on - strand at 205.724 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.734 kb on - strand at 205.739 kb on - strand at 205.750 kb on + strand at 205.759 kb on - strand at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.807 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.815 kb on - strand, within PGA1_c02290 at 205.820 kb on - strand, within PGA1_c02290 at 205.836 kb on - strand, within PGA1_c02290 at 205.864 kb on + strand, within PGA1_c02290 at 205.882 kb on - strand, within PGA1_c02290 at 205.888 kb on + strand, within PGA1_c02290 at 205.960 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 206.008 kb on + strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.074 kb on + strand, within PGA1_c02290 at 206.077 kb on - strand, within PGA1_c02290 at 206.096 kb on + strand, within PGA1_c02290 at 206.179 kb on + strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.232 kb on - strand, within PGA1_c02290 at 206.239 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.306 kb on + strand, within PGA1_c02290 at 206.319 kb on + strand, within PGA1_c02290 at 206.436 kb on - strand at 206.441 kb on - strand at 206.445 kb on - strand at 206.448 kb on + strand at 206.449 kb on + strand at 206.502 kb on + strand at 206.523 kb on + strand at 206.526 kb on - strand at 206.531 kb on - strand at 206.531 kb on - strand at 206.538 kb on - strand at 206.571 kb on + strand, within PGA1_c02300 at 206.575 kb on - strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.600 kb on + strand, within PGA1_c02300 at 206.603 kb on + strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.681 kb on + strand, within PGA1_c02300 at 206.710 kb on - strand, within PGA1_c02300 at 206.727 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.771 kb on + strand, within PGA1_c02300 at 206.778 kb on + strand, within PGA1_c02300 at 206.802 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.808 kb on - strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.818 kb on - strand, within PGA1_c02300 at 206.841 kb on + strand, within PGA1_c02300 at 206.844 kb on + strand, within PGA1_c02300 at 206.903 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.928 kb on + strand, within PGA1_c02300 at 206.944 kb on + strand, within PGA1_c02300 at 206.947 kb on - strand, within PGA1_c02300 at 206.954 kb on + strand, within PGA1_c02300 at 206.987 kb on - strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 207.033 kb on - strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.122 kb on - strand, within PGA1_c02300 at 207.179 kb on + strand at 207.187 kb on - strand at 207.187 kb on - strand at 207.200 kb on + strand at 207.208 kb on - strand at 207.231 kb on - strand at 207.243 kb on - strand at 207.274 kb on + strand at 207.274 kb on + strand at 207.282 kb on - strand at 207.282 kb on - strand at 207.304 kb on + strand at 207.355 kb on - strand at 207.398 kb on - strand, within PGA1_c02310 at 207.398 kb on - strand, within PGA1_c02310 at 207.408 kb on - strand, within PGA1_c02310 at 207.414 kb on + strand, within PGA1_c02310 at 207.425 kb on + strand, within PGA1_c02310 at 207.443 kb on + strand, within PGA1_c02310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 204,749 - -0.6 204,794 + +1.3 204,803 + +1.1 204,811 - +0.6 204,821 + -0.4 204,845 + PGA1_c02280 0.12 +0.0 204,848 - PGA1_c02280 0.13 +0.7 204,852 + PGA1_c02280 0.13 +2.0 204,852 + PGA1_c02280 0.13 +1.6 204,852 + PGA1_c02280 0.13 +2.0 204,887 - PGA1_c02280 0.17 +1.9 204,897 - PGA1_c02280 0.18 +0.9 204,908 - PGA1_c02280 0.19 -3.3 204,918 - PGA1_c02280 0.20 +1.0 204,939 - PGA1_c02280 0.22 -0.4 204,952 + PGA1_c02280 0.24 -0.3 204,952 + PGA1_c02280 0.24 -0.8 204,952 + PGA1_c02280 0.24 -0.1 204,960 - PGA1_c02280 0.25 -1.7 204,960 - PGA1_c02280 0.25 +0.2 204,960 - PGA1_c02280 0.25 +0.1 204,989 + PGA1_c02280 0.28 -1.5 204,994 + PGA1_c02280 0.28 -1.0 204,997 - PGA1_c02280 0.28 -0.4 204,997 - PGA1_c02280 0.28 +0.5 204,999 + PGA1_c02280 0.29 -0.8 205,017 + PGA1_c02280 0.30 +0.1 205,025 - PGA1_c02280 0.31 +0.7 205,059 - PGA1_c02280 0.35 -0.5 205,073 - PGA1_c02280 0.36 -2.1 205,118 + PGA1_c02280 0.41 -1.6 205,118 + PGA1_c02280 0.41 +1.0 205,118 + PGA1_c02280 0.41 -0.1 205,118 + PGA1_c02280 0.41 -1.1 205,126 - PGA1_c02280 0.42 -1.7 205,126 - PGA1_c02280 0.42 +0.5 205,126 - PGA1_c02280 0.42 -2.0 205,126 - PGA1_c02280 0.42 +1.6 205,126 - PGA1_c02280 0.42 -0.0 205,126 - PGA1_c02280 0.42 +0.5 205,131 - PGA1_c02280 0.42 -0.1 205,153 + PGA1_c02280 0.45 +0.1 205,208 - PGA1_c02280 0.51 -0.5 205,229 + PGA1_c02280 0.53 +0.2 205,247 + PGA1_c02280 0.55 +0.6 205,247 - PGA1_c02280 0.55 -0.3 205,255 - PGA1_c02280 0.56 +0.6 205,255 - PGA1_c02280 0.56 +1.3 205,255 - PGA1_c02280 0.56 -1.7 205,285 + PGA1_c02280 0.59 -0.8 205,290 + PGA1_c02280 0.59 -0.3 205,293 - PGA1_c02280 0.60 +0.6 205,294 - PGA1_c02280 0.60 +0.4 205,298 - PGA1_c02280 0.60 -0.3 205,298 - PGA1_c02280 0.60 +0.1 205,298 - PGA1_c02280 0.60 +0.6 205,298 - PGA1_c02280 0.60 +1.3 205,313 + PGA1_c02280 0.62 +0.2 205,313 + PGA1_c02280 0.62 -0.3 205,313 + PGA1_c02280 0.62 +0.3 205,321 - PGA1_c02280 0.62 +0.4 205,321 - PGA1_c02280 0.62 -0.2 205,362 + PGA1_c02280 0.67 -0.9 205,370 - PGA1_c02280 0.68 +1.8 205,376 - PGA1_c02280 0.68 -0.6 205,410 + PGA1_c02280 0.72 +0.0 205,410 + PGA1_c02280 0.72 -1.6 205,410 + PGA1_c02280 0.72 +1.1 205,410 + PGA1_c02280 0.72 -1.7 205,410 + PGA1_c02280 0.72 -1.6 205,410 + PGA1_c02280 0.72 +1.1 205,410 + PGA1_c02280 0.72 +0.4 205,410 + PGA1_c02280 0.72 -0.3 205,410 + PGA1_c02280 0.72 +1.5 205,410 + PGA1_c02280 0.72 -0.7 205,418 - PGA1_c02280 0.73 +1.4 205,418 - PGA1_c02280 0.73 -0.3 205,418 - PGA1_c02280 0.73 +0.7 205,418 - PGA1_c02280 0.73 +1.0 205,418 - PGA1_c02280 0.73 -0.1 205,450 + PGA1_c02280 0.76 +0.1 205,455 + PGA1_c02280 0.77 +0.3 205,458 - PGA1_c02280 0.77 +1.0 205,463 - PGA1_c02280 0.77 +0.6 205,477 + PGA1_c02280 0.79 +0.6 205,483 - PGA1_c02280 0.79 -0.0 205,483 - PGA1_c02280 0.79 -0.1 205,485 - PGA1_c02280 0.80 +0.1 205,491 + PGA1_c02280 0.80 +0.7 205,548 - PGA1_c02280 0.86 +0.7 205,549 - PGA1_c02280 0.86 -1.0 205,578 + PGA1_c02280 0.89 -1.8 205,601 + -0.0 205,638 - +0.0 205,724 + +0.1 205,731 + -1.6 205,731 + -0.8 205,731 + +0.2 205,734 - -1.1 205,739 - -0.4 205,750 + -0.4 205,759 - -0.1 205,783 + PGA1_c02290 0.13 -1.3 205,783 + PGA1_c02290 0.13 -0.1 205,783 + PGA1_c02290 0.13 +0.4 205,788 + PGA1_c02290 0.14 +0.4 205,788 + PGA1_c02290 0.14 -0.9 205,791 - PGA1_c02290 0.14 +0.1 205,791 - PGA1_c02290 0.14 +0.7 205,796 - PGA1_c02290 0.15 -1.6 205,796 - PGA1_c02290 0.15 +1.5 205,807 + PGA1_c02290 0.16 -1.6 205,812 + PGA1_c02290 0.17 -1.1 205,812 + PGA1_c02290 0.17 -0.4 205,812 + PGA1_c02290 0.17 -1.7 205,815 - PGA1_c02290 0.17 -0.7 205,820 - PGA1_c02290 0.18 -0.3 205,836 - PGA1_c02290 0.20 -1.0 205,864 + PGA1_c02290 0.23 -0.3 205,882 - PGA1_c02290 0.25 +0.6 205,888 + PGA1_c02290 0.26 -1.6 205,960 + PGA1_c02290 0.35 -0.0 205,994 + PGA1_c02290 0.39 -0.1 205,994 + PGA1_c02290 0.39 -0.1 206,008 + PGA1_c02290 0.41 -0.3 206,012 - PGA1_c02290 0.42 -2.8 206,012 - PGA1_c02290 0.42 +0.3 206,074 + PGA1_c02290 0.49 +0.4 206,077 - PGA1_c02290 0.50 +0.5 206,096 + PGA1_c02290 0.52 +0.0 206,179 + PGA1_c02290 0.63 -0.3 206,215 - PGA1_c02290 0.67 +0.0 206,215 - PGA1_c02290 0.67 +1.6 206,232 - PGA1_c02290 0.69 +1.2 206,239 + PGA1_c02290 0.70 -1.5 206,270 + PGA1_c02290 0.74 -2.4 206,270 + PGA1_c02290 0.74 +0.1 206,278 - PGA1_c02290 0.75 -0.7 206,278 - PGA1_c02290 0.75 -1.3 206,278 - PGA1_c02290 0.75 -2.1 206,278 - PGA1_c02290 0.75 -1.1 206,278 - PGA1_c02290 0.75 -0.8 206,278 - PGA1_c02290 0.75 -0.4 206,306 + PGA1_c02290 0.78 -0.3 206,319 + PGA1_c02290 0.80 +0.7 206,436 - +1.1 206,441 - +0.7 206,445 - -0.3 206,448 + +0.6 206,449 + -0.9 206,502 + -0.4 206,523 + -0.6 206,526 - +0.3 206,531 - -0.6 206,531 - -1.4 206,538 - +0.6 206,571 + PGA1_c02300 0.13 +0.3 206,575 - PGA1_c02300 0.14 +1.1 206,586 + PGA1_c02300 0.15 +0.0 206,586 + PGA1_c02300 0.15 +1.2 206,600 + PGA1_c02300 0.17 -0.3 206,603 + PGA1_c02300 0.17 +2.6 206,608 - PGA1_c02300 0.18 -2.4 206,608 - PGA1_c02300 0.18 +0.4 206,681 + PGA1_c02300 0.27 -0.8 206,710 - PGA1_c02300 0.31 +0.6 206,727 + PGA1_c02300 0.33 -0.8 206,729 + PGA1_c02300 0.33 +2.1 206,729 + PGA1_c02300 0.33 -0.4 206,771 + PGA1_c02300 0.39 -1.8 206,778 + PGA1_c02300 0.40 +0.6 206,802 - PGA1_c02300 0.43 +0.0 206,803 - PGA1_c02300 0.43 +0.6 206,803 - PGA1_c02300 0.43 +0.2 206,808 - PGA1_c02300 0.44 -0.2 206,810 + PGA1_c02300 0.44 -0.4 206,810 + PGA1_c02300 0.44 +0.5 206,818 - PGA1_c02300 0.45 +0.1 206,841 + PGA1_c02300 0.48 -0.5 206,844 + PGA1_c02300 0.48 +0.3 206,903 - PGA1_c02300 0.56 -0.0 206,913 - PGA1_c02300 0.57 +0.2 206,913 - PGA1_c02300 0.57 +1.3 206,928 + PGA1_c02300 0.59 -0.0 206,944 + PGA1_c02300 0.61 -0.3 206,947 - PGA1_c02300 0.61 +0.7 206,954 + PGA1_c02300 0.62 -1.3 206,987 - PGA1_c02300 0.67 -0.3 206,998 + PGA1_c02300 0.68 -0.1 206,998 + PGA1_c02300 0.68 -0.1 207,033 - PGA1_c02300 0.72 -0.5 207,065 + PGA1_c02300 0.77 +1.7 207,065 + PGA1_c02300 0.77 -0.8 207,073 - PGA1_c02300 0.78 -0.6 207,073 - PGA1_c02300 0.78 -1.1 207,073 - PGA1_c02300 0.78 +0.4 207,122 - PGA1_c02300 0.84 +0.4 207,179 + +0.3 207,187 - -0.2 207,187 - +0.7 207,200 + +0.4 207,208 - +1.7 207,231 - +0.4 207,243 - +0.3 207,274 + -0.8 207,274 + +0.2 207,282 - +0.6 207,282 - +0.2 207,304 + -0.4 207,355 - -0.1 207,398 - PGA1_c02310 0.13 -0.2 207,398 - PGA1_c02310 0.13 -0.7 207,408 - PGA1_c02310 0.14 -1.6 207,414 + PGA1_c02310 0.14 -1.4 207,425 + PGA1_c02310 0.15 +1.0 207,443 + PGA1_c02310 0.17 -0.3
Or see this region's nucleotide sequence