Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16390 and PGA1_c16400 are separated by 81 nucleotides PGA1_c16400 and PGA1_c16410 are separated by 601 nucleotides
PGA1_c16390: PGA1_c16390 - ornithine cyclodeaminase ArcB, at 1,699,820 to 1,700,866
_c16390
PGA1_c16400: PGA1_c16400 - HNH endonuclease, at 1,700,948 to 1,701,514
_c16400
PGA1_c16410: PGA1_c16410 - ribosomal large subunit pseudouridine synthase E, at 1,702,116 to 1,702,814
_c16410
Position (kb)
1700
1701
1702 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1700.076 kb on + strand, within PGA1_c16390 at 1700.084 kb on + strand, within PGA1_c16390 at 1700.084 kb on - strand, within PGA1_c16390 at 1700.110 kb on - strand, within PGA1_c16390 at 1700.436 kb on - strand, within PGA1_c16390 at 1700.486 kb on + strand, within PGA1_c16390 at 1700.498 kb on + strand, within PGA1_c16390 at 1700.747 kb on + strand, within PGA1_c16390 at 1700.836 kb on + strand at 1700.886 kb on + strand at 1700.980 kb on + strand at 1700.999 kb on - strand at 1701.001 kb on + strand at 1701.009 kb on - strand, within PGA1_c16400 at 1701.009 kb on - strand, within PGA1_c16400 at 1701.023 kb on + strand, within PGA1_c16400 at 1701.067 kb on - strand, within PGA1_c16400 at 1701.067 kb on - strand, within PGA1_c16400 at 1701.092 kb on - strand, within PGA1_c16400 at 1701.153 kb on - strand, within PGA1_c16400 at 1701.283 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.393 kb on - strand, within PGA1_c16400 at 1701.445 kb on + strand, within PGA1_c16400 at 1701.508 kb on + strand at 1701.516 kb on - strand at 1701.537 kb on + strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.592 kb on + strand at 1701.600 kb on - strand at 1701.701 kb on - strand at 1701.727 kb on - strand at 1701.778 kb on - strand at 1701.796 kb on - strand at 1701.801 kb on + strand at 1701.810 kb on - strand at 1701.865 kb on + strand at 1701.871 kb on - strand at 1702.029 kb on + strand at 1702.039 kb on + strand at 1702.068 kb on - strand at 1702.071 kb on + strand at 1702.143 kb on + strand at 1702.221 kb on - strand, within PGA1_c16410 at 1702.237 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.360 kb on - strand, within PGA1_c16410 at 1702.391 kb on + strand, within PGA1_c16410 at 1702.438 kb on - strand, within PGA1_c16410 at 1702.470 kb on - strand, within PGA1_c16410 at 1702.483 kb on - strand, within PGA1_c16410 at 1702.514 kb on - strand, within PGA1_c16410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 1,700,076 + PGA1_c16390 0.24 -1.5 1,700,084 + PGA1_c16390 0.25 +0.7 1,700,084 - PGA1_c16390 0.25 +0.7 1,700,110 - PGA1_c16390 0.28 +0.1 1,700,436 - PGA1_c16390 0.59 +0.9 1,700,486 + PGA1_c16390 0.64 +0.6 1,700,498 + PGA1_c16390 0.65 -1.2 1,700,747 + PGA1_c16390 0.89 -1.1 1,700,836 + +0.7 1,700,886 + +1.8 1,700,980 + +2.1 1,700,999 - +0.6 1,701,001 + -0.6 1,701,009 - PGA1_c16400 0.11 +0.1 1,701,009 - PGA1_c16400 0.11 +1.0 1,701,023 + PGA1_c16400 0.13 -0.4 1,701,067 - PGA1_c16400 0.21 -0.3 1,701,067 - PGA1_c16400 0.21 +1.3 1,701,092 - PGA1_c16400 0.25 +1.0 1,701,153 - PGA1_c16400 0.36 -0.0 1,701,283 - PGA1_c16400 0.59 +0.9 1,701,383 - PGA1_c16400 0.77 -0.2 1,701,383 - PGA1_c16400 0.77 +1.1 1,701,383 - PGA1_c16400 0.77 +0.6 1,701,383 - PGA1_c16400 0.77 +1.0 1,701,393 - PGA1_c16400 0.78 +0.6 1,701,445 + PGA1_c16400 0.88 +0.4 1,701,508 + -0.9 1,701,516 - +1.6 1,701,537 + -1.2 1,701,545 - +1.0 1,701,545 - -2.4 1,701,545 - -0.7 1,701,545 - +0.6 1,701,592 + -1.4 1,701,600 - -0.8 1,701,701 - +1.4 1,701,727 - +0.1 1,701,778 - +2.7 1,701,796 - +0.5 1,701,801 + +0.3 1,701,810 - +0.5 1,701,865 + +1.0 1,701,871 - +2.3 1,702,029 + -0.6 1,702,039 + +0.6 1,702,068 - -0.4 1,702,071 + +0.5 1,702,143 + +0.4 1,702,221 - PGA1_c16410 0.15 +1.2 1,702,237 - PGA1_c16410 0.17 +0.8 1,702,360 - PGA1_c16410 0.35 +0.7 1,702,360 - PGA1_c16410 0.35 +0.8 1,702,360 - PGA1_c16410 0.35 -1.9 1,702,391 + PGA1_c16410 0.39 -0.4 1,702,438 - PGA1_c16410 0.46 +0.2 1,702,470 - PGA1_c16410 0.51 +1.1 1,702,483 - PGA1_c16410 0.53 +0.2 1,702,514 - PGA1_c16410 0.57 +0.2
Or see this region's nucleotide sequence