Experiment: m.b. Zinc 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16180 and PGA1_c16190 are separated by 320 nucleotides PGA1_c16190 and PGA1_c16200 are separated by 198 nucleotides PGA1_c16200 and PGA1_c16210 overlap by 4 nucleotides PGA1_c16210 and PGA1_c16220 overlap by 1 nucleotides
PGA1_c16180: PGA1_c16180 - TRAP transporter solute receptor, TAXI family, at 1,680,189 to 1,681,154
_c16180
PGA1_c16190: PGA1_c16190 - hypothetical protein, at 1,681,475 to 1,681,654
_c16190
PGA1_c16200: PGA1_c16200 - molybdopterin dehydrogenase, FAD-binding, at 1,681,853 to 1,682,719
_c16200
PGA1_c16210: PGA1_c16210 - iron-sulfur cluster binding domain-containing protein, at 1,682,716 to 1,683,198
_c16210
PGA1_c16220: PGA1_c16220 - molybdopterin binding domain-containing protein, at 1,683,198 to 1,685,468
_c16220
Position (kb)
1681
1682
1683 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1680.950 kb on - strand, within PGA1_c16180 at 1681.094 kb on - strand at 1681.139 kb on + strand at 1681.149 kb on + strand at 1681.157 kb on - strand at 1681.157 kb on - strand at 1681.158 kb on - strand at 1681.227 kb on - strand at 1681.289 kb on + strand at 1681.296 kb on - strand at 1681.323 kb on - strand at 1681.325 kb on + strand at 1681.326 kb on + strand at 1681.333 kb on - strand at 1681.333 kb on - strand at 1681.366 kb on - strand at 1681.372 kb on - strand at 1681.423 kb on - strand at 1681.468 kb on - strand at 1681.473 kb on + strand at 1681.535 kb on - strand, within PGA1_c16190 at 1681.535 kb on - strand, within PGA1_c16190 at 1681.557 kb on - strand, within PGA1_c16190 at 1681.713 kb on - strand at 1681.747 kb on + strand at 1681.747 kb on + strand at 1681.836 kb on + strand at 1681.913 kb on + strand at 1681.914 kb on - strand at 1681.920 kb on + strand at 1681.921 kb on - strand at 1681.928 kb on - strand at 1682.091 kb on + strand, within PGA1_c16200 at 1682.098 kb on + strand, within PGA1_c16200 at 1682.113 kb on + strand, within PGA1_c16200 at 1682.135 kb on + strand, within PGA1_c16200 at 1682.156 kb on + strand, within PGA1_c16200 at 1682.156 kb on + strand, within PGA1_c16200 at 1682.164 kb on - strand, within PGA1_c16200 at 1682.188 kb on + strand, within PGA1_c16200 at 1682.204 kb on + strand, within PGA1_c16200 at 1682.204 kb on + strand, within PGA1_c16200 at 1682.212 kb on - strand, within PGA1_c16200 at 1682.267 kb on - strand, within PGA1_c16200 at 1682.285 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.351 kb on - strand, within PGA1_c16200 at 1682.372 kb on + strand, within PGA1_c16200 at 1682.372 kb on + strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.414 kb on - strand, within PGA1_c16200 at 1682.426 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.529 kb on + strand, within PGA1_c16200 at 1682.532 kb on - strand, within PGA1_c16200 at 1682.581 kb on + strand, within PGA1_c16200 at 1682.695 kb on - strand at 1682.712 kb on + strand at 1682.905 kb on - strand, within PGA1_c16210 at 1682.923 kb on - strand, within PGA1_c16210 at 1683.050 kb on + strand, within PGA1_c16210 at 1683.120 kb on + strand, within PGA1_c16210 at 1683.230 kb on - strand at 1683.234 kb on - strand at 1683.269 kb on - strand at 1683.295 kb on - strand at 1683.323 kb on + strand at 1683.388 kb on - strand at 1683.414 kb on + strand at 1683.422 kb on - strand at 1683.476 kb on + strand, within PGA1_c16220 at 1683.551 kb on - strand, within PGA1_c16220 at 1683.561 kb on - strand, within PGA1_c16220 at 1683.561 kb on - strand, within PGA1_c16220 at 1683.561 kb on - strand, within PGA1_c16220 at 1683.577 kb on + strand, within PGA1_c16220 at 1683.587 kb on + strand, within PGA1_c16220 at 1683.647 kb on + strand, within PGA1_c16220 at 1683.685 kb on - strand, within PGA1_c16220 at 1683.712 kb on - strand, within PGA1_c16220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.32 mM remove 1,680,950 - PGA1_c16180 0.79 -0.6 1,681,094 - -0.8 1,681,139 + -0.2 1,681,149 + -0.1 1,681,157 - +0.9 1,681,157 - -1.2 1,681,158 - +0.1 1,681,227 - +0.9 1,681,289 + +1.4 1,681,296 - +0.1 1,681,323 - +0.3 1,681,325 + +0.1 1,681,326 + -1.0 1,681,333 - +0.9 1,681,333 - +0.1 1,681,366 - +0.7 1,681,372 - -0.1 1,681,423 - -2.0 1,681,468 - +0.3 1,681,473 + -1.3 1,681,535 - PGA1_c16190 0.33 -1.0 1,681,535 - PGA1_c16190 0.33 -0.4 1,681,557 - PGA1_c16190 0.46 +0.3 1,681,713 - -0.6 1,681,747 + +1.7 1,681,747 + -0.6 1,681,836 + +0.1 1,681,913 + +1.4 1,681,914 - -0.0 1,681,920 + -0.8 1,681,921 - +0.4 1,681,928 - +0.1 1,682,091 + PGA1_c16200 0.27 +0.1 1,682,098 + PGA1_c16200 0.28 -0.0 1,682,113 + PGA1_c16200 0.30 +0.5 1,682,135 + PGA1_c16200 0.33 +0.9 1,682,156 + PGA1_c16200 0.35 +0.2 1,682,156 + PGA1_c16200 0.35 -2.9 1,682,164 - PGA1_c16200 0.36 +1.0 1,682,188 + PGA1_c16200 0.39 -0.5 1,682,204 + PGA1_c16200 0.40 +0.1 1,682,204 + PGA1_c16200 0.40 -0.5 1,682,212 - PGA1_c16200 0.41 +1.7 1,682,267 - PGA1_c16200 0.48 +1.1 1,682,285 + PGA1_c16200 0.50 +0.1 1,682,338 + PGA1_c16200 0.56 -0.4 1,682,338 + PGA1_c16200 0.56 +0.6 1,682,338 + PGA1_c16200 0.56 +0.1 1,682,351 - PGA1_c16200 0.57 -0.3 1,682,372 + PGA1_c16200 0.60 -0.3 1,682,372 + PGA1_c16200 0.60 +0.7 1,682,380 - PGA1_c16200 0.61 +2.2 1,682,380 - PGA1_c16200 0.61 +0.7 1,682,380 - PGA1_c16200 0.61 -0.4 1,682,380 - PGA1_c16200 0.61 -1.2 1,682,414 - PGA1_c16200 0.65 +1.0 1,682,426 + PGA1_c16200 0.66 -0.3 1,682,524 + PGA1_c16200 0.77 -0.2 1,682,524 + PGA1_c16200 0.77 +1.2 1,682,524 + PGA1_c16200 0.77 +0.1 1,682,529 + PGA1_c16200 0.78 +1.3 1,682,532 - PGA1_c16200 0.78 +0.5 1,682,581 + PGA1_c16200 0.84 +1.1 1,682,695 - +1.1 1,682,712 + -0.6 1,682,905 - PGA1_c16210 0.39 -0.0 1,682,923 - PGA1_c16210 0.43 +0.9 1,683,050 + PGA1_c16210 0.69 -0.3 1,683,120 + PGA1_c16210 0.84 +0.6 1,683,230 - -0.3 1,683,234 - +0.8 1,683,269 - -1.9 1,683,295 - -0.2 1,683,323 + +0.6 1,683,388 - +0.6 1,683,414 + +0.5 1,683,422 - -0.3 1,683,476 + PGA1_c16220 0.12 +1.1 1,683,551 - PGA1_c16220 0.16 +0.3 1,683,561 - PGA1_c16220 0.16 +0.4 1,683,561 - PGA1_c16220 0.16 -0.3 1,683,561 - PGA1_c16220 0.16 -0.9 1,683,577 + PGA1_c16220 0.17 -1.3 1,683,587 + PGA1_c16220 0.17 -0.1 1,683,647 + PGA1_c16220 0.20 -0.7 1,683,685 - PGA1_c16220 0.21 +1.9 1,683,712 - PGA1_c16220 0.23 -0.0
Or see this region's nucleotide sequence