Strain Fitness in Shewanella amazonensis SB2B around Sama_2004

Experiment: LB rep2 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t1
2,433,741	+		Sama_2003	0.59	-1.0
2,433,742	-		Sama_2003	0.59	+0.8
2,433,764	-		Sama_2003	0.60	-0.2
2,433,824	+		Sama_2003	0.63	-0.9
2,434,000	+		Sama_2003	0.71	-0.2
2,434,001	-		Sama_2003	0.71	-0.2
2,434,076	+		Sama_2003	0.74	+0.5
2,434,085	+		Sama_2003	0.74	-1.4
2,434,188	-		Sama_2003	0.79	+0.3
2,434,189	+		Sama_2003	0.79	-1.2
2,434,190	-		Sama_2003	0.79	-0.2
2,434,190	-		Sama_2003	0.79	-0.2
2,434,191	+		Sama_2003	0.79	+0.2
2,434,250	+		Sama_2003	0.82	-0.2
2,434,251	-		Sama_2003	0.82	+0.3
2,434,251	-		Sama_2003	0.82	+0.9
2,434,309	-		Sama_2003	0.84	-1.2
2,434,316	+		Sama_2003	0.85	-0.2
2,434,317	-		Sama_2003	0.85	-0.2
2,434,349	+		Sama_2003	0.86	+0.8
2,434,384	+		Sama_2003	0.88	+0.6
2,434,461	+				+0.0
2,434,461	+				-1.1
2,434,461	+				-0.2
2,434,461	+				-0.2
2,434,461	+				+0.4
2,434,461	+				+0.9
2,434,462	-				-0.3
2,434,462	-				+0.2
2,434,462	-				-0.6
2,434,462	-				-1.4
2,434,481	+				-0.8
2,434,522	-				-0.3
2,434,522	-				+0.4
2,434,641	-				-0.2
2,434,642	+				+0.1
2,434,642	+				+0.8
2,434,642	+				-0.8
2,434,642	+				-0.2
2,434,642	+				-0.2
2,434,643	-				+0.0
2,434,643	-				-0.8
2,434,643	-				+1.4
2,434,643	-				-0.3
2,434,643	-				-0.4
2,434,643	-				-1.6
2,434,643	-				+1.6
2,434,643	-				+0.1
2,434,643	-				-0.8
2,434,643	-				+0.0
2,434,643	-				+0.5
2,434,643	-				+2.4
2,434,643	-				-0.2
2,434,643	-				-1.8
2,434,646	+				+0.8
2,434,646	+				+0.5
2,434,646	+				+0.4
2,434,646	+				-0.8
2,434,647	-				-1.8
2,434,647	-				+1.4
2,434,647	-				-0.1
2,434,647	-				+0.8
2,434,647	-				-0.1
2,434,647	-				+1.2
2,434,647	-				+0.4
2,434,647	-				+0.3
2,434,652	+				+0.6
2,434,652	+				-1.2
2,434,653	-				-0.6
2,434,653	-				-0.2
2,434,653	-				-0.6
2,434,653	-				-0.7
2,434,667	+				+0.8
2,434,680	+				+0.2
2,434,694	+				-0.1
2,434,694	+				+0.1
2,434,870	+		Sama_2004	0.22	+0.1
2,434,871	-		Sama_2004	0.22	-0.9
2,434,915	+		Sama_2004	0.28	+0.0
2,434,916	-		Sama_2004	0.28	+0.4
2,435,057	+		Sama_2004	0.48	+0.2
2,435,057	+		Sama_2004	0.48	-0.6
2,435,070	-		Sama_2004	0.50	-0.2
2,435,070	-		Sama_2004	0.50	+0.0
2,435,070	-		Sama_2004	0.50	-0.5
2,435,070	-		Sama_2004	0.50	-0.8
2,435,135	-		Sama_2004	0.59	-0.8
2,435,135	-		Sama_2004	0.59	+0.5
2,435,155	+		Sama_2004	0.62	-0.1
2,435,216	+		Sama_2004	0.70	-0.2
2,435,216	+		Sama_2004	0.70	-0.8
2,435,226	-		Sama_2004	0.71	+1.1
2,435,226	-		Sama_2004	0.71	-0.6
2,435,226	-		Sama_2004	0.71	-0.2
2,435,280	+		Sama_2004	0.79	-1.2
2,435,281	-		Sama_2004	0.79	-1.0
2,435,281	-		Sama_2004	0.79	+0.0
2,435,281	-		Sama_2004	0.79	+0.1
2,435,292	+		Sama_2004	0.80	-0.9
2,435,293	-		Sama_2004	0.81	+0.3
2,435,405	+				+1.1
2,435,418	+				+0.7
2,435,432	+				-1.8
2,435,488	+				-0.1
2,435,488	+				-0.5
2,435,488	+				+1.0
2,435,488	+				-0.9
2,435,489	-				+1.1
2,435,489	-				-0.2
2,435,489	-				+0.9
2,435,492	+				+0.1
2,435,492	+				-0.4
2,435,492	+				-0.8
2,435,492	+				-0.2
2,435,493	-				+0.1
2,435,493	-				+1.8
2,435,493	-				-0.5
2,435,536	+				-0.5
2,435,537	-				+0.8
2,435,537	-				+1.5
2,435,537	-				-0.2
2,435,540	+				-0.2
2,435,593	-				-0.8
2,435,593	-				-0.4
2,435,602	+				+0.2
2,435,602	+				-0.5
2,435,603	-				-0.8
2,435,603	-				+1.8
2,435,603	-				-1.2
2,435,614	+				-0.5
2,435,614	+				-1.1
2,435,615	-				+0.1
2,435,645	+				-0.6
2,435,720	-				-0.6
2,435,746	+		Sama_2005	0.11	-0.6
2,435,746	+		Sama_2005	0.11	-0.6
2,435,746	+		Sama_2005	0.11	-0.5
2,435,747	-		Sama_2005	0.11	-0.4
2,435,747	-		Sama_2005	0.11	+1.2
2,435,747	-		Sama_2005	0.11	+1.0
2,435,747	-		Sama_2005	0.11	+0.6
2,435,820	+		Sama_2005	0.21	+0.4
2,435,822	+		Sama_2005	0.22	+0.8
2,435,822	+		Sama_2005	0.22	+0.1
2,435,822	+		Sama_2005	0.22	-0.2
2,435,822	+		Sama_2005	0.22	+0.8
2,435,822	+		Sama_2005	0.22	+0.1
2,435,822	+		Sama_2005	0.22	+1.3
2,435,822	+		Sama_2005	0.22	+0.8
2,435,822	+		Sama_2005	0.22	-0.0
2,435,822	+		Sama_2005	0.22	-1.2
2,435,822	+		Sama_2005	0.22	+0.6
2,435,822	+		Sama_2005	0.22	+0.2
2,435,823	-		Sama_2005	0.22	-1.0
2,435,823	-		Sama_2005	0.22	+0.9
2,435,823	-		Sama_2005	0.22	-0.2
2,435,823	-		Sama_2005	0.22	+0.5
2,435,823	-		Sama_2005	0.22	-0.5
2,435,823	-		Sama_2005	0.22	-0.2
2,435,823	-		Sama_2005	0.22	-0.0
2,435,823	-		Sama_2005	0.22	+0.1
2,435,823	-		Sama_2005	0.22	+0.2
2,435,823	-		Sama_2005	0.22	+1.2
2,435,823	-		Sama_2005	0.22	-0.0
2,435,826	+		Sama_2005	0.22	+0.2
2,435,826	+		Sama_2005	0.22	+1.1
2,435,827	-		Sama_2005	0.22	-0.2
2,435,827	-		Sama_2005	0.22	-0.2
2,435,971	+		Sama_2005	0.43	+0.5
2,435,972	-		Sama_2005	0.43	+0.2
2,435,972	-		Sama_2005	0.43	-0.2
2,435,972	-		Sama_2005	0.43	-2.8
2,435,972	-		Sama_2005	0.43	-0.3
2,435,974	-		Sama_2005	0.44	-0.6
2,436,046	-		Sama_2005	0.54	-1.8
2,436,046	-		Sama_2005	0.54	+0.6
2,436,095	+		Sama_2005	0.61	+0.7
2,436,095	+		Sama_2005	0.61	-0.6
2,436,095	+		Sama_2005	0.61	-1.4
2,436,096	-		Sama_2005	0.61	+0.5
2,436,096	-		Sama_2005	0.61	-0.6
2,436,096	-		Sama_2005	0.61	+0.2
2,436,096	-		Sama_2005	0.61	+1.0
2,436,096	-		Sama_2005	0.61	-0.2
2,436,096	-		Sama_2005	0.61	+0.1
2,436,096	-		Sama_2005	0.61	+0.1
2,436,096	-		Sama_2005	0.61	-0.5
2,436,096	-		Sama_2005	0.61	+0.8
2,436,096	-		Sama_2005	0.61	-0.1
2,436,119	-		Sama_2005	0.64	+0.8
2,436,266	+		Sama_2005	0.85	+0.8
2,436,266	+		Sama_2005	0.85	-0.2
2,436,266	+		Sama_2005	0.85	-0.1
2,436,267	-		Sama_2005	0.86	+1.6
2,436,267	-		Sama_2005	0.86	+1.8
2,436,267	-		Sama_2005	0.86	-0.4
2,436,267	-		Sama_2005	0.86	-0.2
2,436,267	-		Sama_2005	0.86	+1.0
2,436,267	-		Sama_2005	0.86	-2.2
2,436,267	-		Sama_2005	0.86	-0.4
2,436,267	-		Sama_2005	0.86	-1.0
2,436,267	-		Sama_2005	0.86	+0.3
2,436,267	-		Sama_2005	0.86	+1.4
2,436,267	-		Sama_2005	0.86	-1.2
2,436,328	+				-0.2
2,436,328	+				-0.2
2,436,329	-				+0.2