Strain Fitness in Shewanella amazonensis SB2B around Sama_1510

Experiment: LB rep2 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t1
1,832,672	+		Sama_1509	0.13	+0.8
1,832,672	+		Sama_1509	0.13	-0.5
1,832,672	+		Sama_1509	0.13	+1.8
1,832,672	+		Sama_1509	0.13	+0.4
1,832,672	+		Sama_1509	0.13	-0.7
1,832,672	+		Sama_1509	0.13	+0.1
1,832,672	+		Sama_1509	0.13	-0.1
1,832,672	+		Sama_1509	0.13	+0.6
1,832,673	-		Sama_1509	0.13	+0.0
1,832,673	-		Sama_1509	0.13	-0.8
1,832,673	-		Sama_1509	0.13	+0.8
1,832,673	-		Sama_1509	0.13	+0.5
1,832,673	-		Sama_1509	0.13	+1.8
1,832,733	-		Sama_1509	0.19	+0.2
1,832,746	+		Sama_1509	0.20	-0.4
1,832,747	-		Sama_1509	0.20	+0.7
1,832,750	+		Sama_1509	0.20	+0.6
1,832,751	-		Sama_1509	0.20	+0.0
1,832,751	-		Sama_1509	0.20	-1.2
1,832,751	-		Sama_1509	0.20	-0.5
1,832,755	-		Sama_1509	0.20	+0.0
1,832,764	-		Sama_1509	0.21	-0.6
1,832,797	+		Sama_1509	0.24	-0.5
1,832,797	+		Sama_1509	0.24	+0.1
1,832,798	-		Sama_1509	0.24	-0.1
1,832,798	-		Sama_1509	0.24	-0.2
1,832,798	-		Sama_1509	0.24	+2.6
1,832,824	+		Sama_1509	0.27	-0.2
1,832,824	+		Sama_1509	0.27	-0.1
1,832,824	+		Sama_1509	0.27	+0.8
1,832,824	+		Sama_1509	0.27	-0.9
1,832,825	-		Sama_1509	0.27	-0.5
1,832,825	-		Sama_1509	0.27	-0.1
1,832,825	-		Sama_1509	0.27	-1.8
1,832,825	-		Sama_1509	0.27	-0.4
1,832,825	-		Sama_1509	0.27	-0.7
1,832,825	-		Sama_1509	0.27	+0.4
1,832,825	-		Sama_1509	0.27	+1.2
1,832,825	-		Sama_1509	0.27	+1.6
1,832,825	-		Sama_1509	0.27	-0.2
1,832,828	+		Sama_1509	0.27	-0.2
1,832,828	+		Sama_1509	0.27	+1.0
1,832,828	+		Sama_1509	0.27	+0.9
1,832,829	-		Sama_1509	0.27	-0.8
1,832,829	-		Sama_1509	0.27	+0.4
1,832,829	-		Sama_1509	0.27	+0.0
1,832,934	+		Sama_1509	0.36	-1.6
1,832,935	-		Sama_1509	0.36	+0.8
1,832,935	-		Sama_1509	0.36	-0.5
1,833,210	+		Sama_1509	0.61	-0.9
1,833,231	+		Sama_1509	0.63	+0.1
1,833,231	+		Sama_1509	0.63	+0.0
1,833,231	+		Sama_1509	0.63	-1.1
1,833,231	+		Sama_1509	0.63	-1.2
1,833,231	+		Sama_1509	0.63	+0.0
1,833,231	+		Sama_1509	0.63	-0.5
1,833,231	+		Sama_1509	0.63	+0.2
1,833,231	+		Sama_1509	0.63	-0.9
1,833,231	+		Sama_1509	0.63	+0.2
1,833,232	-		Sama_1509	0.63	-0.7
1,833,232	-		Sama_1509	0.63	+0.5
1,833,232	-		Sama_1509	0.63	-1.2
1,833,232	-		Sama_1509	0.63	-0.4
1,833,233	+		Sama_1509	0.63	+0.5
1,833,233	+		Sama_1509	0.63	+0.0
1,833,234	-		Sama_1509	0.63	+0.0
1,833,234	-		Sama_1509	0.63	+1.1
1,833,234	-		Sama_1509	0.63	-1.2
1,833,304	+		Sama_1509	0.69	+0.3
1,833,323	+		Sama_1509	0.71	-0.6
1,833,336	-		Sama_1509	0.72	-0.2
1,833,378	+		Sama_1509	0.76	-0.2
1,833,378	+		Sama_1509	0.76	+0.1
1,833,378	+		Sama_1509	0.76	+0.1
1,833,379	-		Sama_1509	0.76	-1.6
1,833,387	+		Sama_1509	0.77	-1.2
1,833,388	-		Sama_1509	0.77	-0.8
1,833,499	+		Sama_1509	0.86	-0.4
1,833,524	+		Sama_1509	0.89	-0.8
1,833,581	+				+0.5
1,833,605	+				-1.0
1,833,605	+				+0.2
1,833,703	+				+0.4
1,833,738	+				-1.4
1,833,738	+				-1.2
1,833,738	+				+0.0
1,833,738	+				-0.2
1,833,738	+				+0.6
1,833,738	+				+0.5
1,833,739	-				+0.8
1,833,739	-				-0.2
1,833,739	-				-0.5
1,833,739	-				-0.2
1,833,739	-				-0.2
1,833,789	-		Sama_1510	0.13	-2.5
1,833,805	-		Sama_1510	0.14	+0.4
1,833,842	+		Sama_1510	0.17	-1.4
1,833,842	+		Sama_1510	0.17	-0.2
1,833,842	+		Sama_1510	0.17	+0.4
1,833,842	+		Sama_1510	0.17	-0.2
1,833,852	+		Sama_1510	0.18	+0.5
1,833,852	+		Sama_1510	0.18	+0.5
1,833,852	+		Sama_1510	0.18	+0.1
1,833,853	-		Sama_1510	0.18	-0.8
1,834,002	-		Sama_1510	0.31	+1.0
1,834,015	+		Sama_1510	0.33	-0.1
1,834,029	+		Sama_1510	0.34	-0.4
1,834,029	+		Sama_1510	0.34	-2.5
1,834,029	+		Sama_1510	0.34	-1.0
1,834,044	+		Sama_1510	0.35	-0.7
1,834,045	-		Sama_1510	0.35	-1.0
1,834,247	+		Sama_1510	0.53	-0.2
1,834,288	+		Sama_1510	0.57	-0.8
1,834,407	+		Sama_1510	0.67	-0.5
1,834,408	-		Sama_1510	0.68	+0.4
1,834,466	+		Sama_1510	0.73	-0.2
1,834,466	+		Sama_1510	0.73	+0.6
1,834,466	+		Sama_1510	0.73	+0.1
1,834,466	+		Sama_1510	0.73	+0.1
1,834,473	+		Sama_1510	0.73	+0.1
1,834,473	+		Sama_1510	0.73	+0.9
1,834,473	+		Sama_1510	0.73	-0.0
1,834,473	+		Sama_1510	0.73	-2.5
1,834,474	-		Sama_1510	0.73	-0.2
1,834,474	-		Sama_1510	0.73	+1.2
1,834,474	-		Sama_1510	0.73	-0.8
1,834,559	+		Sama_1510	0.81	-0.9
1,834,559	+		Sama_1510	0.81	-0.3
1,834,559	+		Sama_1510	0.81	+1.8
1,834,560	-		Sama_1510	0.81	-0.4
1,834,560	-		Sama_1510	0.81	-0.7
1,834,622	-		Sama_1510	0.87	+0.5
1,834,754	+				-1.5
1,834,770	+				+0.2
1,834,770	+				+1.1
1,834,770	+				-0.7
1,834,771	-				+0.4
1,834,771	-				+0.7
1,834,800	+				+0.4
1,834,800	+				-0.5
1,834,801	-				+0.8
1,834,837	+				-0.4
1,834,837	+				+0.1
1,834,837	+				+0.2
1,834,837	+				+1.0
1,834,837	+				-1.2
1,834,837	+				+0.6
1,834,837	+				-0.2
1,834,837	+				+0.1
1,834,837	+				+1.4
1,834,838	-				+1.4
1,835,050	-		Sama_1511	0.21	-0.9
1,835,064	+		Sama_1511	0.22	+0.9
1,835,064	+		Sama_1511	0.22	+0.2
1,835,072	+		Sama_1511	0.23	+0.2
1,835,072	+		Sama_1511	0.23	+1.1
1,835,073	-		Sama_1511	0.23	+0.4
1,835,073	-		Sama_1511	0.23	+1.4
1,835,073	-		Sama_1511	0.23	-0.2
1,835,073	-		Sama_1511	0.23	+0.6
1,835,078	+		Sama_1511	0.24	+0.1
1,835,079	-		Sama_1511	0.24	+1.4
1,835,079	-		Sama_1511	0.24	+0.4
1,835,100	-		Sama_1511	0.25	+0.5
1,835,100	-		Sama_1511	0.25	-0.6
1,835,100	-		Sama_1511	0.25	+0.9
1,835,105	+		Sama_1511	0.26	+0.6
1,835,105	+		Sama_1511	0.26	-0.1
1,835,105	+		Sama_1511	0.26	+0.4
1,835,105	+		Sama_1511	0.26	-0.5
1,835,106	-		Sama_1511	0.26	-0.5
1,835,106	-		Sama_1511	0.26	+0.8
1,835,109	+		Sama_1511	0.26	+0.4
1,835,197	+		Sama_1511	0.33	-0.2
1,835,197	+		Sama_1511	0.33	-0.3
1,835,293	+		Sama_1511	0.41	+1.5
1,835,293	+		Sama_1511	0.41	-0.2
1,835,303	+		Sama_1511	0.41	+0.8
1,835,303	+		Sama_1511	0.41	-0.2
1,835,304	-		Sama_1511	0.42	-0.2
1,835,304	-		Sama_1511	0.42	+0.5
1,835,304	-		Sama_1511	0.42	-0.2
1,835,309	-		Sama_1511	0.42	+0.4
1,835,335	+		Sama_1511	0.44	+0.4
1,835,335	+		Sama_1511	0.44	+0.0
1,835,335	+		Sama_1511	0.44	-2.2
1,835,336	-		Sama_1511	0.44	+0.0
1,835,340	+		Sama_1511	0.44	-1.4
1,835,340	+		Sama_1511	0.44	-1.2
1,835,341	-		Sama_1511	0.45	-1.8
1,835,341	-		Sama_1511	0.45	+0.5
1,835,426	-		Sama_1511	0.51	-1.2
1,835,428	+		Sama_1511	0.51	+0.8
1,835,466	+		Sama_1511	0.55	+1.1
1,835,467	-		Sama_1511	0.55	-0.2
1,835,467	-		Sama_1511	0.55	-1.5
1,835,553	-		Sama_1511	0.61	-1.4
1,835,557	+		Sama_1511	0.62	-0.5
1,835,557	+		Sama_1511	0.62	+0.4
1,835,557	+		Sama_1511	0.62	+0.7
1,835,558	-		Sama_1511	0.62	-0.5
1,835,558	-		Sama_1511	0.62	+1.8
1,835,567	+		Sama_1511	0.63	-0.5
1,835,568	-		Sama_1511	0.63	+0.4
1,835,568	-		Sama_1511	0.63	+0.2
1,835,568	-		Sama_1511	0.63	-0.2
1,835,569	+		Sama_1511	0.63	-1.0
1,835,569	+		Sama_1511	0.63	+0.6
1,835,613	+		Sama_1511	0.66	-0.2
1,835,713	-		Sama_1511	0.74	-0.8
1,835,761	+		Sama_1511	0.78	-1.2
1,835,762	-		Sama_1511	0.78	-0.1