Strain Fitness in Shewanella amazonensis SB2B around Sama_0909

Experiment: LB rep2 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t1
1,098,281	-		Sama_0908	0.53	+0.7
1,098,283	+		Sama_0908	0.53	+0.1
1,098,308	+		Sama_0908	0.54	+0.9
1,098,340	+		Sama_0908	0.55	-0.3
1,098,340	+		Sama_0908	0.55	-0.2
1,098,340	+		Sama_0908	0.55	-0.6
1,098,340	+		Sama_0908	0.55	-0.1
1,098,340	+		Sama_0908	0.55	-0.1
1,098,341	-		Sama_0908	0.55	+0.6
1,098,349	+		Sama_0908	0.56	-0.5
1,098,349	+		Sama_0908	0.56	-0.3
1,098,349	+		Sama_0908	0.56	-0.1
1,098,350	-		Sama_0908	0.56	-0.7
1,098,350	-		Sama_0908	0.56	-0.4
1,098,413	+		Sama_0908	0.59	-0.3
1,098,434	+		Sama_0908	0.60	+0.3
1,098,515	-		Sama_0908	0.64	-0.7
1,098,581	+		Sama_0908	0.67	+0.6
1,098,581	+		Sama_0908	0.67	-0.2
1,098,582	-		Sama_0908	0.67	+2.0
1,098,588	+		Sama_0908	0.68	+2.0
1,098,588	+		Sama_0908	0.68	-1.7
1,098,588	+		Sama_0908	0.68	-0.1
1,098,588	+		Sama_0908	0.68	-0.9
1,098,589	-		Sama_0908	0.68	-0.5
1,098,589	-		Sama_0908	0.68	-0.5
1,098,589	-		Sama_0908	0.68	+0.9
1,098,589	-		Sama_0908	0.68	+0.7
1,098,589	-		Sama_0908	0.68	+0.9
1,098,589	-		Sama_0908	0.68	+0.9
1,098,668	+		Sama_0908	0.71	+0.7
1,098,677	+		Sama_0908	0.72	+1.4
1,098,677	+		Sama_0908	0.72	-0.3
1,098,677	+		Sama_0908	0.72	-1.1
1,098,677	+		Sama_0908	0.72	-0.4
1,098,714	+		Sama_0908	0.74	-1.1
1,098,714	+		Sama_0908	0.74	+0.4
1,098,715	-		Sama_0908	0.74	+0.3
1,098,715	-		Sama_0908	0.74	+0.0
1,098,715	-		Sama_0908	0.74	-0.7
1,098,715	-		Sama_0908	0.74	-1.6
1,098,725	-		Sama_0908	0.74	-0.4
1,098,741	+		Sama_0908	0.75	+0.5
1,098,741	+		Sama_0908	0.75	+0.5
1,098,802	+		Sama_0908	0.78	+0.8
1,098,802	+		Sama_0908	0.78	+1.1
1,098,867	-		Sama_0908	0.81	-0.1
1,098,867	-		Sama_0908	0.81	+0.5
1,098,889	+		Sama_0908	0.82	-0.9
1,098,974	+		Sama_0908	0.86	+1.2
1,098,975	-		Sama_0908	0.86	-0.8
1,098,998	+		Sama_0908	0.88	+0.6
1,098,998	+		Sama_0908	0.88	+0.3
1,098,998	+		Sama_0908	0.88	+0.4
1,098,998	+		Sama_0908	0.88	+0.9
1,098,999	-		Sama_0908	0.88	-0.5
1,098,999	-		Sama_0908	0.88	+0.4
1,098,999	-		Sama_0908	0.88	-0.7
1,099,033	+		Sama_0908	0.89	+0.3
1,099,033	+		Sama_0908	0.89	+0.2
1,099,034	-		Sama_0908	0.89	-1.7
1,099,034	-		Sama_0908	0.89	-0.1
1,099,053	-				-1.1
1,099,060	-				-2.7
1,099,081	+				-0.7
1,099,081	+				-0.4
1,099,122	-				-0.6
1,099,130	+				+0.5
1,099,146	+				-0.2
1,099,175	+				-0.6
1,099,175	+				+1.5
1,099,175	+				+0.1
1,099,175	+				+0.3
1,099,176	-				-0.1
1,099,248	+				+0.9
1,099,248	+				-1.3
1,099,249	-				+0.7
1,099,249	-				-1.4
1,099,297	+				+0.4
1,099,297	+				-0.3
1,099,298	-				-0.6
1,099,298	-				+0.2
1,099,319	+				-0.1
1,099,319	+				+1.6
1,099,319	+				+0.3
1,099,319	+				+1.3
1,099,320	-				-0.5
1,099,333	+				-0.7
1,099,366	+		Sama_0909	0.10	+1.5
1,099,377	+		Sama_0909	0.11	-0.1
1,099,377	+		Sama_0909	0.11	-0.2
1,099,377	+		Sama_0909	0.11	-1.4
1,099,377	+		Sama_0909	0.11	-0.1
1,099,377	+		Sama_0909	0.11	-0.6
1,099,378	-		Sama_0909	0.11	-0.4
1,099,378	-		Sama_0909	0.11	+0.4
1,099,472	+		Sama_0909	0.20	-0.5
1,099,472	+		Sama_0909	0.20	-1.1
1,099,473	-		Sama_0909	0.20	-0.4
1,099,473	-		Sama_0909	0.20	-0.4
1,099,486	-		Sama_0909	0.21	+0.2
1,099,507	-		Sama_0909	0.23	-0.7
1,099,531	+		Sama_0909	0.25	+0.0
1,099,612	+		Sama_0909	0.33	+0.3
1,099,613	-		Sama_0909	0.33	+1.5
1,099,613	-		Sama_0909	0.33	+0.5
1,099,744	+		Sama_0909	0.45	+1.0
1,099,745	-		Sama_0909	0.45	+0.5
1,099,832	-		Sama_0909	0.53	-1.4
1,099,907	+		Sama_0909	0.60	+0.9
1,099,907	+		Sama_0909	0.60	-1.4
1,099,908	-		Sama_0909	0.60	+0.3
1,099,908	-		Sama_0909	0.60	+0.8
1,099,969	-		Sama_0909	0.65	+0.8
1,099,993	+		Sama_0909	0.67	-0.5
1,099,993	+		Sama_0909	0.67	+0.9
1,099,994	-		Sama_0909	0.67	-1.1
1,100,046	+		Sama_0909	0.72	-1.7
1,100,046	+		Sama_0909	0.72	-0.7
1,100,047	-		Sama_0909	0.72	-0.1
1,100,047	-		Sama_0909	0.72	-0.1
1,100,049	+		Sama_0909	0.73	-0.2
1,100,049	+		Sama_0909	0.73	-0.0
1,100,049	+		Sama_0909	0.73	+0.5
1,100,049	+		Sama_0909	0.73	-0.3
1,100,050	-		Sama_0909	0.73	-0.7
1,100,050	-		Sama_0909	0.73	-2.7
1,100,055	+		Sama_0909	0.73	-0.4
1,100,084	+		Sama_0909	0.76	-0.9
1,100,085	-		Sama_0909	0.76	-0.9
1,100,201	+		Sama_0909	0.86	+0.4
1,100,201	+		Sama_0909	0.86	-1.0
1,100,201	+		Sama_0909	0.86	+0.3
1,100,201	+		Sama_0909	0.86	-1.1
1,100,201	+		Sama_0909	0.86	-0.4
1,100,201	+		Sama_0909	0.86	-0.7
1,100,201	+		Sama_0909	0.86	-0.4
1,100,201	+		Sama_0909	0.86	+0.6
1,100,201	+		Sama_0909	0.86	-0.4
1,100,201	+		Sama_0909	0.86	-0.4
1,100,202	-		Sama_0909	0.86	+0.7
1,100,202	-		Sama_0909	0.86	-0.6
1,100,202	-		Sama_0909	0.86	-0.5
1,100,202	-		Sama_0909	0.86	+2.2
1,100,202	-		Sama_0909	0.86	-0.2
1,100,309	+				+1.5
1,100,330	+				+0.9
1,100,340	+				-0.5
1,100,396	+				+0.3
1,100,397	-				+0.5
1,100,398	+				-0.6
1,100,399	-				+0.5
1,100,422	-				-0.1
1,100,424	+				+1.5
1,100,424	+				-0.3
1,100,424	+				+0.5
1,100,428	-				+0.7
1,100,434	+				-0.8
1,100,463	+				+0.1
1,100,464	-				+0.6
1,100,496	+				+0.7
1,100,496	+				-0.5
1,100,497	-				+1.2
1,100,537	+		Sama_0910	0.14	+0.5
1,100,538	-		Sama_0910	0.14	+1.2
1,100,590	+		Sama_0910	0.23	-0.7
1,100,590	+		Sama_0910	0.23	-0.1
1,100,590	+		Sama_0910	0.23	+0.6
1,100,590	+		Sama_0910	0.23	-0.3
1,100,590	+		Sama_0910	0.23	-2.1
1,100,591	-		Sama_0910	0.24	-0.8
1,100,592	+		Sama_0910	0.24	-0.1
1,100,592	+		Sama_0910	0.24	-0.1
1,100,592	+		Sama_0910	0.24	-0.4
1,100,593	-		Sama_0910	0.24	+0.2
1,100,593	-		Sama_0910	0.24	+0.6
1,100,602	+		Sama_0910	0.26	+1.0
1,100,641	+		Sama_0910	0.33	+1.5
1,100,641	+		Sama_0910	0.33	+0.1
1,100,642	-		Sama_0910	0.33	-0.2
1,100,642	-		Sama_0910	0.33	-0.5
1,100,642	-		Sama_0910	0.33	-0.1
1,100,642	-		Sama_0910	0.33	+1.3
1,100,647	+		Sama_0910	0.34	-0.6
1,100,647	+		Sama_0910	0.34	-1.1
1,100,647	+		Sama_0910	0.34	+0.6
1,100,648	-		Sama_0910	0.34	-0.7
1,100,648	-		Sama_0910	0.34	-1.7
1,100,658	+		Sama_0910	0.36	+0.9
1,100,658	+		Sama_0910	0.36	+0.6
1,100,662	+		Sama_0910	0.37	+0.2
1,100,662	+		Sama_0910	0.37	-1.4
1,100,663	-		Sama_0910	0.37	-1.1
1,100,663	-		Sama_0910	0.37	+0.5
1,100,732	+		Sama_0910	0.50	+0.9
1,100,733	-		Sama_0910	0.50	+0.5
1,100,751	+		Sama_0910	0.53	+0.2
1,100,751	+		Sama_0910	0.53	-0.2
1,100,752	-		Sama_0910	0.53	+0.2
1,100,752	-		Sama_0910	0.53	-1.1
1,100,752	-		Sama_0910	0.53	-0.2
1,100,752	-		Sama_0910	0.53	+0.6
1,100,757	+		Sama_0910	0.54	+0.9
1,100,758	-		Sama_0910	0.54	+0.1
1,100,798	+		Sama_0910	0.62	-1.1
1,100,798	+		Sama_0910	0.62	+0.5
1,100,799	-		Sama_0910	0.62	+0.4
1,100,806	+		Sama_0910	0.63	+0.3
1,100,806	+		Sama_0910	0.63	+0.1
1,100,829	+		Sama_0910	0.68	+0.0
1,100,829	+		Sama_0910	0.68	-0.4
1,100,829	+		Sama_0910	0.68	+1.9
1,100,829	+		Sama_0910	0.68	+0.5
1,100,829	+		Sama_0910	0.68	+0.3
1,100,829	+		Sama_0910	0.68	+1.1
1,100,829	+		Sama_0910	0.68	+0.3
1,100,829	+		Sama_0910	0.68	+0.2
1,100,829	+		Sama_0910	0.68	+1.6
1,100,829	+		Sama_0910	0.68	+0.5
1,100,829	+		Sama_0910	0.68	-0.3
1,100,829	+		Sama_0910	0.68	-1.1
1,100,829	+		Sama_0910	0.68	+0.8
1,100,830	-		Sama_0910	0.68	+2.5
1,100,830	-		Sama_0910	0.68	+0.9
1,100,830	-		Sama_0910	0.68	+1.5
1,100,830	-		Sama_0910	0.68	-0.1
1,100,830	-		Sama_0910	0.68	+1.5
1,100,830	-		Sama_0910	0.68	+0.2
1,100,830	-		Sama_0910	0.68	+1.9
1,100,830	-		Sama_0910	0.68	-0.8
1,100,830	-		Sama_0910	0.68	+1.5
1,100,877	+		Sama_0910	0.76	+0.6
1,100,877	+		Sama_0910	0.76	-0.5
1,100,877	+		Sama_0910	0.76	+0.8
1,100,877	+		Sama_0910	0.76	+0.9
1,100,878	-		Sama_0910	0.77	+0.3
1,100,939	+		Sama_0910	0.88	-0.8
1,100,940	-		Sama_0910	0.88	+0.0
1,101,020	+				+1.2
1,101,062	+				+0.5
1,101,086	+		Sama_0911	0.13	+0.9
1,101,087	-		Sama_0911	0.14	+1.0
1,101,105	+		Sama_0911	0.24	+0.9
1,101,186	+		Sama_0911	0.67	+0.3
1,101,206	-		Sama_0911	0.78	-2.1
1,101,206	-		Sama_0911	0.78	+0.2
1,101,225	+		Sama_0911	0.88	+0.5
1,101,226	-		Sama_0911	0.89	-0.1
1,101,226	-		Sama_0911	0.89	-0.1
1,101,226	-		Sama_0911	0.89	+0.0
1,101,230	+				+0.2
1,101,230	+				+0.9
1,101,231	-				-0.4
1,101,231	-				-0.6
1,101,231	-				+0.1
1,101,231	-				+0.8
1,101,231	-				-0.8
1,101,235	+				+1.5
1,101,236	-				-0.5
1,101,236	-				-0.3
1,101,265	+				-0.8
1,101,265	+				+0.5
1,101,266	-				-0.3
1,101,282	+				+0.2
1,101,283	-				-0.1
1,101,286	+				-0.2
1,101,287	-				+0.1
1,101,287	-				-1.1
1,101,287	-				+0.3