Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09620 and PGA1_c09630 are separated by 58 nucleotides PGA1_c09630 and PGA1_c09640 overlap by 4 nucleotides PGA1_c09640 and PGA1_c09650 are separated by 183 nucleotides
PGA1_c09620: PGA1_c09620 - UDP-N-acetylmuramate--L-alanine ligase MurC, at 986,891 to 988,288
_c09620
PGA1_c09630: PGA1_c09630 - Protein of unknown function (DUF2484)., at 988,347 to 988,601
_c09630
PGA1_c09640: PGA1_c09640 - Protein of unknown function (DUF2484)., at 988,598 to 988,849
_c09640
PGA1_c09650: PGA1_c09650 - UDP-N-acetylenolpyruvoylglucosamine reductase MurB, at 989,033 to 989,956
_c09650
Position (kb) 988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 988.297 kb on + strand at 988.347 kb on + strand at 988.387 kb on + strand, within PGA1_c09630 at 988.623 kb on + strand at 988.631 kb on - strand, within PGA1_c09640 at 988.648 kb on + strand, within PGA1_c09640 at 988.658 kb on + strand, within PGA1_c09640 at 988.751 kb on + strand, within PGA1_c09640 at 988.771 kb on - strand, within PGA1_c09640 at 988.790 kb on - strand, within PGA1_c09640 at 988.792 kb on + strand, within PGA1_c09640 at 988.800 kb on - strand, within PGA1_c09640 at 988.811 kb on - strand, within PGA1_c09640 at 988.899 kb on + strand at 988.942 kb on + strand at 988.942 kb on + strand at 988.950 kb on - strand at 989.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 988,297 + +0.0 988,347 + -0.1 988,387 + PGA1_c09630 0.16 -0.8 988,623 + -0.8 988,631 - PGA1_c09640 0.13 -2.4 988,648 + PGA1_c09640 0.20 -1.9 988,658 + PGA1_c09640 0.24 -1.4 988,751 + PGA1_c09640 0.61 -1.4 988,771 - PGA1_c09640 0.69 -1.3 988,790 - PGA1_c09640 0.76 +0.9 988,792 + PGA1_c09640 0.77 -2.3 988,800 - PGA1_c09640 0.80 -0.5 988,811 - PGA1_c09640 0.85 -0.3 988,899 + +0.2 988,942 + +1.8 988,942 + -0.7 988,950 - -3.0 989,009 - -1.4
Or see this region's nucleotide sequence