Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09560 and PGA1_c09570 are separated by 3 nucleotides PGA1_c09570 and PGA1_c09580 are separated by 4 nucleotides PGA1_c09580 and PGA1_c09590 are separated by 79 nucleotides
PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427
_c09560
PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874
_c09570
PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172
_c09580
PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433
_c09590
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 982.421 kb on + strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.531 kb on - strand, within PGA1_c09570 at 982.564 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.594 kb on - strand, within PGA1_c09570 at 982.598 kb on - strand, within PGA1_c09570 at 982.608 kb on - strand, within PGA1_c09570 at 982.726 kb on - strand, within PGA1_c09570 at 982.727 kb on - strand, within PGA1_c09570 at 982.820 kb on + strand, within PGA1_c09570 at 982.828 kb on - strand, within PGA1_c09570 at 982.830 kb on + strand at 982.830 kb on + strand at 982.849 kb on - strand at 982.882 kb on + strand at 982.885 kb on - strand at 982.885 kb on - strand at 982.890 kb on - strand at 982.913 kb on + strand, within PGA1_c09580 at 982.913 kb on + strand, within PGA1_c09580 at 982.921 kb on - strand, within PGA1_c09580 at 983.013 kb on + strand, within PGA1_c09580 at 983.085 kb on - strand, within PGA1_c09580 at 983.132 kb on - strand, within PGA1_c09580 at 983.138 kb on - strand, within PGA1_c09580 at 983.250 kb on + strand at 983.250 kb on + strand at 983.258 kb on - strand at 983.284 kb on - strand at 983.297 kb on - strand at 983.297 kb on - strand at 983.330 kb on + strand at 983.442 kb on - strand, within PGA1_c09590 at 983.444 kb on + strand, within PGA1_c09590 at 983.519 kb on + strand, within PGA1_c09590 at 983.538 kb on + strand, within PGA1_c09590 at 983.539 kb on + strand, within PGA1_c09590 at 983.672 kb on + strand, within PGA1_c09590 at 983.687 kb on + strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.741 kb on - strand, within PGA1_c09590 at 983.743 kb on + strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.809 kb on + strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.876 kb on - strand, within PGA1_c09590 at 983.916 kb on - strand, within PGA1_c09590 at 983.936 kb on - strand, within PGA1_c09590 at 983.982 kb on + strand, within PGA1_c09590 at 984.036 kb on - strand, within PGA1_c09590 at 984.050 kb on + strand, within PGA1_c09590 at 984.073 kb on + strand, within PGA1_c09590 at 984.138 kb on + strand, within PGA1_c09590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 982,421 + +2.9 982,423 + +1.0 982,423 + -1.9 982,531 - PGA1_c09570 0.23 -2.1 982,564 + PGA1_c09570 0.30 -2.8 982,590 + PGA1_c09570 0.36 -0.3 982,590 + PGA1_c09570 0.36 +0.4 982,594 - PGA1_c09570 0.37 -1.3 982,598 - PGA1_c09570 0.38 -2.1 982,608 - PGA1_c09570 0.40 -0.9 982,726 - PGA1_c09570 0.66 +0.1 982,727 - PGA1_c09570 0.67 -0.5 982,820 + PGA1_c09570 0.88 -0.7 982,828 - PGA1_c09570 0.89 -0.7 982,830 + -0.4 982,830 + -1.9 982,849 - +0.6 982,882 + -0.5 982,885 - +0.3 982,885 - +2.5 982,890 - -0.9 982,913 + PGA1_c09580 0.12 -1.1 982,913 + PGA1_c09580 0.12 +1.5 982,921 - PGA1_c09580 0.14 -2.3 983,013 + PGA1_c09580 0.46 +0.6 983,085 - PGA1_c09580 0.70 -2.8 983,132 - PGA1_c09580 0.86 -1.1 983,138 - PGA1_c09580 0.88 -0.5 983,250 + -1.8 983,250 + +0.7 983,258 - -1.4 983,284 - -2.4 983,297 - -1.1 983,297 - +1.7 983,330 + -0.8 983,442 - PGA1_c09590 0.16 -1.9 983,444 + PGA1_c09590 0.16 +2.9 983,519 + PGA1_c09590 0.23 -1.9 983,538 + PGA1_c09590 0.24 -0.9 983,539 + PGA1_c09590 0.24 -0.0 983,672 + PGA1_c09590 0.36 +0.9 983,687 + PGA1_c09590 0.37 -0.4 983,695 - PGA1_c09590 0.37 +0.6 983,695 - PGA1_c09590 0.37 +1.5 983,741 - PGA1_c09590 0.41 +1.7 983,743 + PGA1_c09590 0.42 -1.3 983,798 - PGA1_c09590 0.46 -0.1 983,798 - PGA1_c09590 0.46 -0.8 983,809 + PGA1_c09590 0.47 +0.9 983,817 - PGA1_c09590 0.48 -0.2 983,817 - PGA1_c09590 0.48 -0.3 983,876 - PGA1_c09590 0.53 +1.8 983,916 - PGA1_c09590 0.56 -0.5 983,936 - PGA1_c09590 0.58 -0.3 983,982 + PGA1_c09590 0.62 -0.6 984,036 - PGA1_c09590 0.66 +1.1 984,050 + PGA1_c09590 0.68 -0.5 984,073 + PGA1_c09590 0.69 +0.7 984,138 + PGA1_c09590 0.75 -1.3
Or see this region's nucleotide sequence