Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09540
Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nalidixic 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
979,653 | + | -0.4 | |||
979,840 | + | +1.4 | |||
979,840 | + | +0.2 | |||
979,924 | + | -0.9 | |||
979,924 | + | -0.1 | |||
979,932 | - | -1.2 | |||
979,937 | + | +0.5 | |||
979,938 | - | +0.6 | |||
979,938 | - | -0.5 | |||
980,066 | + | +1.3 | |||
980,074 | - | -1.9 | |||
980,113 | + | PGA1_c09550 | 0.13 | -0.3 | |
980,206 | - | PGA1_c09550 | 0.23 | -0.4 | |
980,238 | - | PGA1_c09550 | 0.27 | -0.5 | |
980,291 | - | PGA1_c09550 | 0.33 | -1.7 | |
980,358 | + | PGA1_c09550 | 0.40 | +0.6 | |
980,358 | + | PGA1_c09550 | 0.40 | -0.7 | |
980,400 | + | PGA1_c09550 | 0.45 | -0.7 | |
980,408 | - | PGA1_c09550 | 0.46 | +1.1 | |
980,408 | - | PGA1_c09550 | 0.46 | +0.1 | |
980,408 | - | PGA1_c09550 | 0.46 | -0.5 | |
980,408 | - | PGA1_c09550 | 0.46 | -1.9 | |
980,487 | - | PGA1_c09550 | 0.54 | +1.2 | |
980,515 | + | PGA1_c09550 | 0.57 | +1.3 | |
980,515 | + | PGA1_c09550 | 0.57 | -1.4 | |
980,520 | + | PGA1_c09550 | 0.58 | -0.7 | |
980,536 | + | PGA1_c09550 | 0.60 | +0.5 | |
980,544 | + | PGA1_c09550 | 0.60 | +0.3 | |
980,556 | - | PGA1_c09550 | 0.62 | -0.2 | |
980,623 | - | PGA1_c09550 | 0.69 | +1.2 | |
980,635 | - | PGA1_c09550 | 0.70 | +0.4 |
Or see this region's nucleotide sequence