Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0890

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0888 and Psest_0889 are separated by 185 nucleotidesPsest_0889 and Psest_0890 are separated by 43 nucleotidesPsest_0890 and Psest_0891 are separated by 59 nucleotidesPsest_0891 and Psest_0892 are separated by 60 nucleotides Psest_0888: Psest_0888 - Uncharacterized membrane-anchored protein conserved in bacteria, at 964,958 to 966,293 _0888 Psest_0889: Psest_0889 - Lactoylglutathione lyase and related lyases, at 966,479 to 966,877 _0889 Psest_0890: Psest_0890 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 966,921 to 968,030 _0890 Psest_0891: Psest_0891 - Uncharacterized protein conserved in bacteria, at 968,090 to 968,314 _0891 Psest_0892: Psest_0892 - Short-chain alcohol dehydrogenase of unknown specificity, at 968,375 to 969,154 _0892 Position (kb) 966 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.974 kb on + strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.975 kb on - strand, within Psest_0888at 965.978 kb on + strand, within Psest_0888at 965.978 kb on + strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 965.979 kb on - strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.081 kb on + strand, within Psest_0888at 966.082 kb on - strand, within Psest_0888at 966.082 kb on - strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.144 kb on + strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.145 kb on - strand, within Psest_0888at 966.146 kb on + strand, within Psest_0888at 966.270 kb on - strandat 966.270 kb on - strandat 966.414 kb on - strandat 966.428 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.430 kb on - strandat 966.432 kb on + strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.433 kb on - strandat 966.492 kb on + strandat 966.492 kb on + strandat 966.493 kb on - strandat 966.528 kb on + strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.529 kb on - strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.537 kb on + strand, within Psest_0889at 966.538 kb on - strand, within Psest_0889at 966.538 kb on - strand, within Psest_0889at 966.731 kb on + strand, within Psest_0889at 966.792 kb on + strand, within Psest_0889at 966.792 kb on + strand, within Psest_0889at 966.793 kb on - strand, within Psest_0889at 966.793 kb on - strand, within Psest_0889at 966.881 kb on + strandat 966.881 kb on + strandat 966.882 kb on - strandat 966.882 kb on - strandat 966.882 kb on - strandat 966.882 kb on - strandat 967.600 kb on + strand, within Psest_0890at 967.601 kb on - strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.627 kb on + strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.628 kb on - strand, within Psest_0890at 967.633 kb on + strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.634 kb on - strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.651 kb on + strand, within Psest_0890at 967.652 kb on - strand, within Psest_0890at 967.768 kb on + strand, within Psest_0890at 967.769 kb on - strand, within Psest_0890at 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.048 kb on + strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.049 kb on - strandat 968.052 kb on + strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.053 kb on - strandat 968.057 kb on - strandat 968.057 kb on - strandat 968.092 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.101 kb on - strandat 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.187 kb on + strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.188 kb on - strand, within Psest_0891at 968.335 kb on + strandat 968.377 kb on - strandat 968.413 kb on + strandat 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.490 kb on + strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.491 kb on - strand, within Psest_0892at 968.620 kb on + strand, within Psest_0892at 968.621 kb on - strand, within Psest_0892at 968.649 kb on + strand, within Psest_0892at 968.758 kb on - strand, within Psest_0892at 968.780 kb on - strand, within Psest_0892at 968.858 kb on + strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.859 kb on - strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.874 kb on + strand, within Psest_0892at 968.875 kb on - strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.923 kb on + strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.924 kb on - strand, within Psest_0892at 968.992 kb on + strand, within Psest_0892at 968.993 kb on - strand, within Psest_0892at 969.018 kb on - strand, within Psest_0892

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
965,974 + Psest_0888 0.76 -1.7
965,974 + Psest_0888 0.76 +1.2
965,974 + Psest_0888 0.76 +0.4
965,974 + Psest_0888 0.76 -1.2
965,974 + Psest_0888 0.76 -0.0
965,974 + Psest_0888 0.76 +1.1
965,974 + Psest_0888 0.76 -2.0
965,974 + Psest_0888 0.76 +0.3
965,974 + Psest_0888 0.76 +0.1
965,975 - Psest_0888 0.76 -2.2
965,975 - Psest_0888 0.76 +0.8
965,975 - Psest_0888 0.76 +0.5
965,975 - Psest_0888 0.76 -0.1
965,975 - Psest_0888 0.76 +0.2
965,975 - Psest_0888 0.76 -1.4
965,975 - Psest_0888 0.76 +1.8
965,975 - Psest_0888 0.76 -1.8
965,975 - Psest_0888 0.76 +0.3
965,975 - Psest_0888 0.76 +2.3
965,975 - Psest_0888 0.76 -0.1
965,975 - Psest_0888 0.76 -0.0
965,975 - Psest_0888 0.76 -0.7
965,978 + Psest_0888 0.76 -0.4
965,978 + Psest_0888 0.76 -1.4
965,979 - Psest_0888 0.76 -3.4
965,979 - Psest_0888 0.76 +0.3
965,979 - Psest_0888 0.76 -0.3
965,979 - Psest_0888 0.76 +0.6
965,979 - Psest_0888 0.76 +1.2
965,979 - Psest_0888 0.76 +1.8
965,979 - Psest_0888 0.76 +0.2
965,979 - Psest_0888 0.76 +0.1
965,979 - Psest_0888 0.76 -3.1
966,081 + Psest_0888 0.84 +2.0
966,081 + Psest_0888 0.84 -0.5
966,081 + Psest_0888 0.84 -1.9
966,081 + Psest_0888 0.84 +0.7
966,082 - Psest_0888 0.84 -0.7
966,082 - Psest_0888 0.84 -1.2
966,144 + Psest_0888 0.89 -1.3
966,144 + Psest_0888 0.89 -0.8
966,144 + Psest_0888 0.89 +0.6
966,145 - Psest_0888 0.89 -1.5
966,145 - Psest_0888 0.89 -0.2
966,145 - Psest_0888 0.89 +0.0
966,145 - Psest_0888 0.89 +0.6
966,145 - Psest_0888 0.89 -1.9
966,145 - Psest_0888 0.89 -0.2
966,145 - Psest_0888 0.89 -1.3
966,146 + Psest_0888 0.89 -0.8
966,270 - +0.5
966,270 - +0.3
966,414 - +2.0
966,428 - +0.6
966,430 - +0.5
966,430 - +1.0
966,430 - +1.6
966,430 - +0.7
966,430 - +1.0
966,430 - +1.8
966,432 + +0.3
966,433 - +2.5
966,433 - +0.5
966,433 - +1.6
966,433 - +0.8
966,492 + +0.0
966,492 + +2.4
966,493 - +0.8
966,528 + Psest_0889 0.12 -1.1
966,529 - Psest_0889 0.13 +0.9
966,529 - Psest_0889 0.13 +1.7
966,529 - Psest_0889 0.13 -0.5
966,529 - Psest_0889 0.13 +0.6
966,537 + Psest_0889 0.15 +0.1
966,537 + Psest_0889 0.15 +0.9
966,537 + Psest_0889 0.15 +1.5
966,537 + Psest_0889 0.15 -1.3
966,537 + Psest_0889 0.15 +0.3
966,537 + Psest_0889 0.15 +0.3
966,538 - Psest_0889 0.15 +1.6
966,538 - Psest_0889 0.15 +1.9
966,731 + Psest_0889 0.63 +0.5
966,792 + Psest_0889 0.78 -1.9
966,792 + Psest_0889 0.78 +0.3
966,793 - Psest_0889 0.79 +2.2
966,793 - Psest_0889 0.79 +1.2
966,881 + -0.3
966,881 + -1.2
966,882 - +0.0
966,882 - +0.3
966,882 - -0.7
966,882 - +1.1
967,600 + Psest_0890 0.61 -0.3
967,601 - Psest_0890 0.61 +0.1
967,627 + Psest_0890 0.64 +1.3
967,627 + Psest_0890 0.64 +0.5
967,627 + Psest_0890 0.64 +1.1
967,627 + Psest_0890 0.64 -0.1
967,628 - Psest_0890 0.64 +0.0
967,628 - Psest_0890 0.64 +0.3
967,628 - Psest_0890 0.64 -0.8
967,628 - Psest_0890 0.64 +1.2
967,628 - Psest_0890 0.64 -1.1
967,633 + Psest_0890 0.64 +0.2
967,634 - Psest_0890 0.64 -0.1
967,634 - Psest_0890 0.64 -0.1
967,634 - Psest_0890 0.64 +0.4
967,634 - Psest_0890 0.64 -0.4
967,651 + Psest_0890 0.66 +0.8
967,651 + Psest_0890 0.66 -0.3
967,651 + Psest_0890 0.66 -0.5
967,651 + Psest_0890 0.66 -0.2
967,651 + Psest_0890 0.66 -1.0
967,652 - Psest_0890 0.66 +0.6
967,768 + Psest_0890 0.76 +0.8
967,769 - Psest_0890 0.76 -0.2
968,045 + -1.2
968,045 + -0.5
968,046 - +0.4
968,048 + -1.7
968,048 + +0.5
968,048 + +0.5
968,049 - -0.3
968,049 - +1.0
968,049 - +1.2
968,049 - +0.9
968,049 - +0.0
968,049 - +0.3
968,049 - +0.7
968,052 + -2.5
968,053 - +0.2
968,053 - -0.7
968,053 - +0.3
968,057 - -1.4
968,057 - +1.4
968,092 - +1.7
968,101 - +0.1
968,101 - +1.3
968,101 - +1.1
968,187 + Psest_0891 0.43 +0.4
968,187 + Psest_0891 0.43 +1.1
968,187 + Psest_0891 0.43 -1.8
968,187 + Psest_0891 0.43 -0.5
968,187 + Psest_0891 0.43 -0.7
968,187 + Psest_0891 0.43 -0.6
968,188 - Psest_0891 0.44 +0.9
968,188 - Psest_0891 0.44 +0.4
968,188 - Psest_0891 0.44 +0.5
968,188 - Psest_0891 0.44 +0.8
968,188 - Psest_0891 0.44 +1.0
968,188 - Psest_0891 0.44 +1.0
968,188 - Psest_0891 0.44 +0.5
968,188 - Psest_0891 0.44 +1.1
968,188 - Psest_0891 0.44 +0.4
968,335 + +0.1
968,377 - +1.6
968,413 + +1.0
968,490 + Psest_0892 0.15 -0.1
968,490 + Psest_0892 0.15 +0.0
968,490 + Psest_0892 0.15 +0.1
968,490 + Psest_0892 0.15 -1.3
968,490 + Psest_0892 0.15 +0.8
968,491 - Psest_0892 0.15 +0.2
968,491 - Psest_0892 0.15 +1.6
968,491 - Psest_0892 0.15 -0.4
968,491 - Psest_0892 0.15 +0.1
968,491 - Psest_0892 0.15 -1.1
968,491 - Psest_0892 0.15 +0.8
968,620 + Psest_0892 0.31 -0.5
968,621 - Psest_0892 0.32 +1.6
968,649 + Psest_0892 0.35 +0.3
968,758 - Psest_0892 0.49 +0.5
968,780 - Psest_0892 0.52 -0.9
968,858 + Psest_0892 0.62 +0.5
968,859 - Psest_0892 0.62 -0.6
968,859 - Psest_0892 0.62 -0.4
968,859 - Psest_0892 0.62 -0.2
968,859 - Psest_0892 0.62 -1.2
968,859 - Psest_0892 0.62 +2.0
968,859 - Psest_0892 0.62 -1.9
968,859 - Psest_0892 0.62 -1.1
968,859 - Psest_0892 0.62 -0.8
968,859 - Psest_0892 0.62 -0.3
968,859 - Psest_0892 0.62 +0.6
968,874 + Psest_0892 0.64 -0.3
968,874 + Psest_0892 0.64 -0.3
968,875 - Psest_0892 0.64 -1.3
968,923 + Psest_0892 0.70 -0.4
968,923 + Psest_0892 0.70 -1.3
968,923 + Psest_0892 0.70 +1.8
968,924 - Psest_0892 0.70 -1.9
968,924 - Psest_0892 0.70 -1.4
968,924 - Psest_0892 0.70 -2.5
968,992 + Psest_0892 0.79 -0.4
968,993 - Psest_0892 0.79 -0.6
969,018 - Psest_0892 0.82 +0.2

Or see this region's nucleotide sequence