Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08400 and PGA1_c08410 are separated by 93 nucleotides PGA1_c08410 and PGA1_c08420 are separated by 150 nucleotides PGA1_c08420 and PGA1_c08430 overlap by 4 nucleotides PGA1_c08430 and PGA1_c08440 are separated by 32 nucleotides
PGA1_c08400: PGA1_c08400 - Uncharacterized conserved protein, at 869,869 to 870,786
_c08400
PGA1_c08410: PGA1_c08410 - hypothetical protein, at 870,880 to 871,212
_c08410
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
PGA1_c08430: PGA1_c08430 - short chain dehydrogenase / reductase, at 872,835 to 873,608
_c08430
PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501
_c08440
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 870.390 kb on + strand at 870.441 kb on - strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.462 kb on + strand, within PGA1_c08400 at 870.470 kb on - strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.522 kb on - strand, within PGA1_c08400 at 870.603 kb on - strand, within PGA1_c08400 at 870.620 kb on - strand, within PGA1_c08400 at 870.631 kb on - strand, within PGA1_c08400 at 870.635 kb on + strand, within PGA1_c08400 at 870.636 kb on + strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.699 kb on - strand at 870.705 kb on + strand at 870.713 kb on + strand at 870.728 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.758 kb on - strand at 870.759 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.818 kb on + strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.842 kb on + strand at 870.845 kb on - strand at 870.860 kb on + strand at 870.904 kb on + strand at 870.923 kb on + strand, within PGA1_c08410 at 870.926 kb on + strand, within PGA1_c08410 at 870.930 kb on + strand, within PGA1_c08410 at 870.934 kb on - strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 871.000 kb on - strand, within PGA1_c08410 at 871.022 kb on - strand, within PGA1_c08410 at 871.050 kb on - strand, within PGA1_c08410 at 871.051 kb on + strand, within PGA1_c08410 at 871.082 kb on + strand, within PGA1_c08410 at 871.139 kb on + strand, within PGA1_c08410 at 871.147 kb on - strand, within PGA1_c08410 at 871.175 kb on + strand, within PGA1_c08410 at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.193 kb on - strand at 871.207 kb on + strand at 871.215 kb on - strand at 871.225 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.309 kb on - strand at 871.381 kb on - strand at 871.391 kb on - strand at 871.391 kb on - strand at 871.396 kb on - strand at 871.396 kb on - strand at 871.421 kb on - strand at 871.464 kb on + strand at 871.472 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.546 kb on + strand, within PGA1_c08420 at 871.584 kb on + strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.748 kb on - strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.763 kb on - strand, within PGA1_c08420 at 871.809 kb on + strand, within PGA1_c08420 at 871.829 kb on - strand, within PGA1_c08420 at 871.886 kb on - strand, within PGA1_c08420 at 871.902 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.111 kb on - strand, within PGA1_c08420 at 872.121 kb on - strand, within PGA1_c08420 at 872.129 kb on + strand, within PGA1_c08420 at 872.178 kb on + strand, within PGA1_c08420 at 872.249 kb on + strand, within PGA1_c08420 at 872.344 kb on - strand, within PGA1_c08420 at 872.381 kb on + strand, within PGA1_c08420 at 872.465 kb on + strand, within PGA1_c08420 at 872.473 kb on - strand, within PGA1_c08420 at 872.530 kb on + strand, within PGA1_c08420 at 872.636 kb on - strand, within PGA1_c08420 at 872.726 kb on + strand at 872.776 kb on - strand at 872.814 kb on - strand at 872.829 kb on + strand at 872.834 kb on + strand at 872.839 kb on + strand at 872.847 kb on + strand at 872.855 kb on - strand at 872.859 kb on + strand at 872.872 kb on - strand at 872.878 kb on + strand at 872.986 kb on + strand, within PGA1_c08430 at 873.045 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.066 kb on + strand, within PGA1_c08430 at 873.076 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.127 kb on - strand, within PGA1_c08430 at 873.203 kb on - strand, within PGA1_c08430 at 873.215 kb on + strand, within PGA1_c08430 at 873.284 kb on - strand, within PGA1_c08430 at 873.317 kb on + strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.357 kb on + strand, within PGA1_c08430 at 873.365 kb on - strand, within PGA1_c08430 at 873.370 kb on - strand, within PGA1_c08430 at 873.375 kb on - strand, within PGA1_c08430 at 873.394 kb on + strand, within PGA1_c08430 at 873.400 kb on - strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.415 kb on + strand, within PGA1_c08430 at 873.418 kb on - strand, within PGA1_c08430 at 873.446 kb on + strand, within PGA1_c08430 at 873.455 kb on + strand, within PGA1_c08430 at 873.457 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.577 kb on + strand at 873.585 kb on - strand at 873.607 kb on + strand at 873.674 kb on + strand at 873.674 kb on + strand at 873.703 kb on - strand at 873.815 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.831 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 870,390 + -0.6 870,441 - PGA1_c08400 0.62 -2.1 870,443 + PGA1_c08400 0.63 +0.2 870,443 + PGA1_c08400 0.63 +1.9 870,462 + PGA1_c08400 0.65 -0.1 870,470 - PGA1_c08400 0.65 +0.9 870,474 + PGA1_c08400 0.66 -2.4 870,474 + PGA1_c08400 0.66 -3.0 870,474 + PGA1_c08400 0.66 +0.6 870,474 + PGA1_c08400 0.66 +0.9 870,482 - PGA1_c08400 0.67 +1.5 870,482 - PGA1_c08400 0.67 +0.1 870,503 + PGA1_c08400 0.69 +0.9 870,503 + PGA1_c08400 0.69 +1.9 870,522 - PGA1_c08400 0.71 -0.4 870,603 - PGA1_c08400 0.80 +0.6 870,620 - PGA1_c08400 0.82 -0.4 870,631 - PGA1_c08400 0.83 +0.5 870,635 + PGA1_c08400 0.83 -0.6 870,636 + PGA1_c08400 0.84 +0.6 870,643 - PGA1_c08400 0.84 -0.5 870,643 - PGA1_c08400 0.84 -0.7 870,691 + PGA1_c08400 0.90 -0.5 870,691 + PGA1_c08400 0.90 -0.6 870,699 - +0.9 870,705 + -0.6 870,713 + -0.2 870,728 + -1.5 870,750 + -1.5 870,750 + +1.1 870,750 + -0.6 870,750 + -0.8 870,756 - +1.4 870,756 - +2.1 870,756 - -0.5 870,758 - +0.9 870,759 + +1.4 870,816 + +1.4 870,816 + +0.2 870,816 + -0.4 870,816 + +0.5 870,816 + -0.3 870,816 + -0.2 870,816 + -0.6 870,816 + +0.5 870,816 + -0.1 870,816 + +0.1 870,816 + -0.4 870,816 + -0.3 870,816 + +0.2 870,816 + -1.5 870,816 + +0.1 870,818 + -0.1 870,824 - -0.1 870,824 - +0.9 870,824 - -0.6 870,824 - +0.3 870,824 - +0.1 870,837 + +1.1 870,837 + +0.6 870,837 + +0.4 870,842 + -1.4 870,845 - +1.5 870,860 + -0.4 870,904 + -0.9 870,923 + PGA1_c08410 0.13 -1.4 870,926 + PGA1_c08410 0.14 +0.4 870,930 + PGA1_c08410 0.15 -0.1 870,934 - PGA1_c08410 0.16 -2.5 870,936 + PGA1_c08410 0.17 +0.1 870,936 + PGA1_c08410 0.17 -0.9 870,992 + PGA1_c08410 0.34 -0.1 870,992 + PGA1_c08410 0.34 -1.1 871,000 - PGA1_c08410 0.36 -0.3 871,022 - PGA1_c08410 0.43 +0.9 871,050 - PGA1_c08410 0.51 -0.4 871,051 + PGA1_c08410 0.51 +1.3 871,082 + PGA1_c08410 0.61 +0.6 871,139 + PGA1_c08410 0.78 +0.2 871,147 - PGA1_c08410 0.80 +1.9 871,175 + PGA1_c08410 0.89 -1.5 871,185 + +1.1 871,185 + +4.8 871,185 + +0.4 871,185 + +0.1 871,185 + +0.5 871,193 - -1.6 871,207 + -2.2 871,215 - -0.1 871,225 + +0.4 871,301 + -0.1 871,301 + +1.5 871,301 + +0.1 871,301 + +0.5 871,309 - -1.4 871,381 - -1.0 871,391 - +0.9 871,391 - -1.2 871,396 - -0.1 871,396 - -0.5 871,421 - -0.6 871,464 + -0.1 871,472 - +0.2 871,500 - -0.8 871,500 - +0.9 871,500 - +0.4 871,546 + PGA1_c08420 0.12 -0.1 871,584 + PGA1_c08420 0.15 -0.6 871,656 - PGA1_c08420 0.20 -2.2 871,656 - PGA1_c08420 0.20 -2.9 871,735 + PGA1_c08420 0.25 +0.4 871,735 + PGA1_c08420 0.25 +0.6 871,748 - PGA1_c08420 0.26 -1.1 871,755 + PGA1_c08420 0.27 -1.4 871,755 + PGA1_c08420 0.27 -2.4 871,763 - PGA1_c08420 0.27 -0.1 871,809 + PGA1_c08420 0.30 -0.4 871,829 - PGA1_c08420 0.32 -0.5 871,886 - PGA1_c08420 0.35 -0.4 871,902 + PGA1_c08420 0.37 +1.2 872,046 + PGA1_c08420 0.46 -1.1 872,046 + PGA1_c08420 0.46 -0.6 872,054 - PGA1_c08420 0.47 -2.3 872,054 - PGA1_c08420 0.47 -0.7 872,054 - PGA1_c08420 0.47 -0.6 872,054 - PGA1_c08420 0.47 +1.2 872,111 - PGA1_c08420 0.51 -0.1 872,121 - PGA1_c08420 0.51 -0.9 872,129 + PGA1_c08420 0.52 -1.7 872,178 + PGA1_c08420 0.55 +1.4 872,249 + PGA1_c08420 0.60 -0.4 872,344 - PGA1_c08420 0.66 -0.1 872,381 + PGA1_c08420 0.69 +0.1 872,465 + PGA1_c08420 0.75 -1.4 872,473 - PGA1_c08420 0.75 +0.9 872,530 + PGA1_c08420 0.79 -1.1 872,636 - PGA1_c08420 0.86 +0.3 872,726 + -2.9 872,776 - +0.9 872,814 - -0.8 872,829 + -2.1 872,834 + -0.2 872,839 + +0.4 872,847 + -1.3 872,855 - -0.7 872,859 + -2.1 872,872 - +0.9 872,878 + +0.1 872,986 + PGA1_c08430 0.20 -0.3 873,045 + PGA1_c08430 0.27 -1.6 873,046 + PGA1_c08430 0.27 -1.0 873,046 + PGA1_c08430 0.27 -0.1 873,066 + PGA1_c08430 0.30 +0.2 873,076 + PGA1_c08430 0.31 +1.6 873,110 + PGA1_c08430 0.36 +0.7 873,110 + PGA1_c08430 0.36 -0.1 873,127 - PGA1_c08430 0.38 +0.5 873,203 - PGA1_c08430 0.48 +0.2 873,215 + PGA1_c08430 0.49 +0.9 873,284 - PGA1_c08430 0.58 -0.6 873,317 + PGA1_c08430 0.62 +1.2 873,319 - PGA1_c08430 0.63 -0.5 873,319 - PGA1_c08430 0.63 -0.8 873,357 + PGA1_c08430 0.67 +1.4 873,365 - PGA1_c08430 0.68 +0.9 873,370 - PGA1_c08430 0.69 -0.4 873,375 - PGA1_c08430 0.70 -0.6 873,394 + PGA1_c08430 0.72 +1.3 873,400 - PGA1_c08430 0.73 +1.3 873,410 + PGA1_c08430 0.74 +0.1 873,410 + PGA1_c08430 0.74 +1.5 873,415 + PGA1_c08430 0.75 +0.6 873,418 - PGA1_c08430 0.75 -0.1 873,446 + PGA1_c08430 0.79 -0.7 873,455 + PGA1_c08430 0.80 +0.3 873,457 - PGA1_c08430 0.80 -0.5 873,463 - PGA1_c08430 0.81 -1.0 873,463 - PGA1_c08430 0.81 +0.6 873,577 + +2.5 873,585 - -1.4 873,607 + -0.1 873,674 + -0.4 873,674 + +1.1 873,703 - -1.1 873,815 + PGA1_c08440 0.20 -0.6 873,828 + PGA1_c08440 0.22 -0.5 873,828 + PGA1_c08440 0.22 -0.6 873,828 + PGA1_c08440 0.22 -1.1 873,828 + PGA1_c08440 0.22 +0.3 873,828 + PGA1_c08440 0.22 +0.3 873,828 + PGA1_c08440 0.22 +0.7 873,828 + PGA1_c08440 0.22 -0.6 873,831 - PGA1_c08440 0.22 -1.6 873,836 - PGA1_c08440 0.23 -1.4 873,836 - PGA1_c08440 0.23 +0.7 873,836 - PGA1_c08440 0.23 -1.3 873,836 - PGA1_c08440 0.23 +1.3 873,836 - PGA1_c08440 0.23 -2.6
Or see this region's nucleotide sequence