Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08390

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08380 and PGA1_c08390 are separated by 97 nucleotidesPGA1_c08390 and PGA1_c08400 are separated by 132 nucleotides PGA1_c08380: PGA1_c08380 - protein Tas, at 867,504 to 868,547 _c08380 PGA1_c08390: PGA1_c08390 - putative transcriptional regulator, AraC family, at 868,645 to 869,736 _c08390 PGA1_c08400: PGA1_c08400 - Uncharacterized conserved protein, at 869,869 to 870,786 _c08400 Position (kb) 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 867.659 kb on + strand, within PGA1_c08380at 867.659 kb on - strand, within PGA1_c08380at 867.669 kb on + strand, within PGA1_c08380at 867.679 kb on + strand, within PGA1_c08380at 867.698 kb on - strand, within PGA1_c08380at 867.706 kb on - strand, within PGA1_c08380at 867.726 kb on + strand, within PGA1_c08380at 867.747 kb on + strand, within PGA1_c08380at 867.755 kb on - strand, within PGA1_c08380at 867.780 kb on + strand, within PGA1_c08380at 867.789 kb on - strand, within PGA1_c08380at 867.792 kb on + strand, within PGA1_c08380at 867.819 kb on + strand, within PGA1_c08380at 867.824 kb on - strand, within PGA1_c08380at 867.895 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.948 kb on + strand, within PGA1_c08380at 867.988 kb on + strand, within PGA1_c08380at 868.011 kb on - strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.041 kb on - strand, within PGA1_c08380at 868.057 kb on + strand, within PGA1_c08380at 868.164 kb on - strand, within PGA1_c08380at 868.170 kb on + strand, within PGA1_c08380at 868.170 kb on + strand, within PGA1_c08380at 868.171 kb on + strand, within PGA1_c08380at 868.181 kb on + strand, within PGA1_c08380at 868.188 kb on + strand, within PGA1_c08380at 868.224 kb on + strand, within PGA1_c08380at 868.242 kb on + strand, within PGA1_c08380at 868.259 kb on + strand, within PGA1_c08380at 868.259 kb on + strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.279 kb on + strand, within PGA1_c08380at 868.285 kb on + strand, within PGA1_c08380at 868.316 kb on + strand, within PGA1_c08380at 868.316 kb on + strand, within PGA1_c08380at 868.324 kb on - strand, within PGA1_c08380at 868.355 kb on + strand, within PGA1_c08380at 868.383 kb on + strand, within PGA1_c08380at 868.386 kb on - strand, within PGA1_c08380at 868.391 kb on - strand, within PGA1_c08380at 868.401 kb on - strand, within PGA1_c08380at 868.476 kb on + strandat 868.476 kb on + strandat 868.476 kb on + strandat 868.484 kb on - strandat 868.497 kb on + strandat 868.516 kb on - strandat 868.541 kb on + strandat 868.551 kb on + strandat 868.581 kb on - strandat 868.636 kb on + strandat 868.636 kb on + strandat 868.644 kb on - strandat 868.644 kb on - strandat 868.646 kb on + strandat 868.781 kb on - strand, within PGA1_c08390at 868.934 kb on - strand, within PGA1_c08390at 869.060 kb on + strand, within PGA1_c08390at 869.060 kb on + strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.088 kb on + strand, within PGA1_c08390at 869.096 kb on - strand, within PGA1_c08390at 869.247 kb on - strand, within PGA1_c08390at 869.259 kb on + strand, within PGA1_c08390at 869.466 kb on + strand, within PGA1_c08390at 869.506 kb on - strand, within PGA1_c08390at 869.532 kb on + strand, within PGA1_c08390at 869.584 kb on - strand, within PGA1_c08390at 869.587 kb on + strand, within PGA1_c08390at 869.595 kb on - strand, within PGA1_c08390at 869.786 kb on + strandat 869.786 kb on + strandat 869.786 kb on + strandat 869.794 kb on - strandat 869.819 kb on + strandat 869.819 kb on + strandat 869.819 kb on + strandat 869.827 kb on - strandat 869.827 kb on - strandat 869.827 kb on - strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.842 kb on + strandat 869.850 kb on - strandat 869.852 kb on - strandat 869.919 kb on - strandat 869.925 kb on - strandat 869.934 kb on + strandat 869.950 kb on - strandat 870.074 kb on + strand, within PGA1_c08400at 870.074 kb on + strand, within PGA1_c08400at 870.082 kb on - strand, within PGA1_c08400at 870.082 kb on - strand, within PGA1_c08400at 870.134 kb on - strand, within PGA1_c08400at 870.146 kb on - strand, within PGA1_c08400at 870.154 kb on - strand, within PGA1_c08400at 870.156 kb on - strand, within PGA1_c08400at 870.219 kb on + strand, within PGA1_c08400at 870.255 kb on + strand, within PGA1_c08400at 870.291 kb on - strand, within PGA1_c08400at 870.323 kb on - strand, within PGA1_c08400at 870.323 kb on - strand, within PGA1_c08400at 870.340 kb on + strand, within PGA1_c08400at 870.340 kb on + strand, within PGA1_c08400at 870.345 kb on + strand, within PGA1_c08400at 870.390 kb on + strandat 870.441 kb on - strand, within PGA1_c08400at 870.443 kb on + strand, within PGA1_c08400at 870.443 kb on + strand, within PGA1_c08400at 870.462 kb on + strand, within PGA1_c08400at 870.470 kb on - strand, within PGA1_c08400at 870.474 kb on + strand, within PGA1_c08400at 870.474 kb on + strand, within PGA1_c08400at 870.474 kb on + strand, within PGA1_c08400at 870.474 kb on + strand, within PGA1_c08400at 870.482 kb on - strand, within PGA1_c08400at 870.482 kb on - strand, within PGA1_c08400at 870.503 kb on + strand, within PGA1_c08400at 870.503 kb on + strand, within PGA1_c08400at 870.522 kb on - strand, within PGA1_c08400at 870.603 kb on - strand, within PGA1_c08400at 870.620 kb on - strand, within PGA1_c08400at 870.631 kb on - strand, within PGA1_c08400at 870.635 kb on + strand, within PGA1_c08400at 870.636 kb on + strand, within PGA1_c08400at 870.643 kb on - strand, within PGA1_c08400at 870.643 kb on - strand, within PGA1_c08400at 870.691 kb on + strand, within PGA1_c08400at 870.691 kb on + strand, within PGA1_c08400at 870.699 kb on - strandat 870.705 kb on + strandat 870.713 kb on + strandat 870.728 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
867,659 + PGA1_c08380 0.15 +0.1
867,659 - PGA1_c08380 0.15 -0.1
867,669 + PGA1_c08380 0.16 +0.2
867,679 + PGA1_c08380 0.17 +0.3
867,698 - PGA1_c08380 0.19 -1.3
867,706 - PGA1_c08380 0.19 -0.1
867,726 + PGA1_c08380 0.21 +0.4
867,747 + PGA1_c08380 0.23 +0.1
867,755 - PGA1_c08380 0.24 +0.8
867,780 + PGA1_c08380 0.26 +0.3
867,789 - PGA1_c08380 0.27 -1.3
867,792 + PGA1_c08380 0.28 +0.7
867,819 + PGA1_c08380 0.30 +1.9
867,824 - PGA1_c08380 0.31 +0.7
867,895 + PGA1_c08380 0.37 +1.8
867,910 + PGA1_c08380 0.39 -1.1
867,910 + PGA1_c08380 0.39 +0.9
867,910 + PGA1_c08380 0.39 +0.5
867,910 + PGA1_c08380 0.39 +0.4
867,910 + PGA1_c08380 0.39 -2.1
867,948 + PGA1_c08380 0.43 -1.5
867,988 + PGA1_c08380 0.46 +0.4
868,011 - PGA1_c08380 0.49 +0.2
868,033 + PGA1_c08380 0.51 -0.1
868,033 + PGA1_c08380 0.51 +0.3
868,033 + PGA1_c08380 0.51 +0.7
868,041 - PGA1_c08380 0.51 -1.1
868,057 + PGA1_c08380 0.53 -0.1
868,164 - PGA1_c08380 0.63 +0.9
868,170 + PGA1_c08380 0.64 -0.2
868,170 + PGA1_c08380 0.64 -0.9
868,171 + PGA1_c08380 0.64 -0.1
868,181 + PGA1_c08380 0.65 +0.1
868,188 + PGA1_c08380 0.66 -1.1
868,224 + PGA1_c08380 0.69 +0.4
868,242 + PGA1_c08380 0.71 -2.4
868,259 + PGA1_c08380 0.72 -1.0
868,259 + PGA1_c08380 0.72 +0.2
868,267 - PGA1_c08380 0.73 -0.3
868,267 - PGA1_c08380 0.73 -0.2
868,267 - PGA1_c08380 0.73 -0.6
868,267 - PGA1_c08380 0.73 +0.9
868,267 - PGA1_c08380 0.73 -0.6
868,279 + PGA1_c08380 0.74 -2.1
868,285 + PGA1_c08380 0.75 -3.6
868,316 + PGA1_c08380 0.78 +0.5
868,316 + PGA1_c08380 0.78 -0.3
868,324 - PGA1_c08380 0.79 -0.4
868,355 + PGA1_c08380 0.82 -1.1
868,383 + PGA1_c08380 0.84 +0.3
868,386 - PGA1_c08380 0.84 +0.4
868,391 - PGA1_c08380 0.85 +0.1
868,401 - PGA1_c08380 0.86 +0.1
868,476 + +0.0
868,476 + +1.1
868,476 + +2.9
868,484 - -0.2
868,497 + +0.5
868,516 - -0.4
868,541 + -2.4
868,551 + +0.3
868,581 - +0.4
868,636 + -0.6
868,636 + -1.9
868,644 - +1.3
868,644 - -0.6
868,646 + -0.6
868,781 - PGA1_c08390 0.12 -0.4
868,934 - PGA1_c08390 0.26 -1.6
869,060 + PGA1_c08390 0.38 -0.3
869,060 + PGA1_c08390 0.38 -1.1
869,068 - PGA1_c08390 0.39 -1.4
869,068 - PGA1_c08390 0.39 +0.3
869,068 - PGA1_c08390 0.39 +0.1
869,068 - PGA1_c08390 0.39 -0.1
869,088 + PGA1_c08390 0.41 -1.1
869,096 - PGA1_c08390 0.41 -2.2
869,247 - PGA1_c08390 0.55 -0.4
869,259 + PGA1_c08390 0.56 -0.6
869,466 + PGA1_c08390 0.75 -0.5
869,506 - PGA1_c08390 0.79 -0.6
869,532 + PGA1_c08390 0.81 -2.2
869,584 - PGA1_c08390 0.86 -1.1
869,587 + PGA1_c08390 0.86 -1.6
869,595 - PGA1_c08390 0.87 +1.4
869,786 + -0.9
869,786 + +0.9
869,786 + -2.2
869,794 - -2.1
869,819 + -0.6
869,819 + -2.1
869,819 + -2.5
869,827 - -0.1
869,827 - -0.1
869,827 - +2.5
869,842 + -1.4
869,842 + -1.1
869,842 + +1.6
869,842 + -0.1
869,842 + -0.3
869,842 + -1.3
869,842 + +0.9
869,842 + -0.1
869,842 + -0.1
869,842 + -0.3
869,842 + -0.4
869,842 + -1.4
869,842 + -1.5
869,842 + -1.9
869,850 - +0.2
869,852 - +0.9
869,919 - +0.9
869,925 - -2.0
869,934 + -0.1
869,950 - +0.9
870,074 + PGA1_c08400 0.22 +0.1
870,074 + PGA1_c08400 0.22 -1.6
870,082 - PGA1_c08400 0.23 +0.9
870,082 - PGA1_c08400 0.23 +1.3
870,134 - PGA1_c08400 0.29 +0.1
870,146 - PGA1_c08400 0.30 -0.1
870,154 - PGA1_c08400 0.31 -0.3
870,156 - PGA1_c08400 0.31 +0.1
870,219 + PGA1_c08400 0.38 +0.6
870,255 + PGA1_c08400 0.42 -1.9
870,291 - PGA1_c08400 0.46 -1.1
870,323 - PGA1_c08400 0.49 +1.5
870,323 - PGA1_c08400 0.49 -0.8
870,340 + PGA1_c08400 0.51 -0.5
870,340 + PGA1_c08400 0.51 -0.6
870,345 + PGA1_c08400 0.52 +2.5
870,390 + -0.6
870,441 - PGA1_c08400 0.62 -2.1
870,443 + PGA1_c08400 0.63 +0.2
870,443 + PGA1_c08400 0.63 +1.9
870,462 + PGA1_c08400 0.65 -0.1
870,470 - PGA1_c08400 0.65 +0.9
870,474 + PGA1_c08400 0.66 -2.4
870,474 + PGA1_c08400 0.66 -3.0
870,474 + PGA1_c08400 0.66 +0.6
870,474 + PGA1_c08400 0.66 +0.9
870,482 - PGA1_c08400 0.67 +1.5
870,482 - PGA1_c08400 0.67 +0.1
870,503 + PGA1_c08400 0.69 +0.9
870,503 + PGA1_c08400 0.69 +1.9
870,522 - PGA1_c08400 0.71 -0.4
870,603 - PGA1_c08400 0.80 +0.6
870,620 - PGA1_c08400 0.82 -0.4
870,631 - PGA1_c08400 0.83 +0.5
870,635 + PGA1_c08400 0.83 -0.6
870,636 + PGA1_c08400 0.84 +0.6
870,643 - PGA1_c08400 0.84 -0.5
870,643 - PGA1_c08400 0.84 -0.7
870,691 + PGA1_c08400 0.90 -0.5
870,691 + PGA1_c08400 0.90 -0.6
870,699 - +0.9
870,705 + -0.6
870,713 + -0.2
870,728 + -1.5

Or see this region's nucleotide sequence