Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07570 and PGA1_c07580 are separated by 67 nucleotides PGA1_c07580 and PGA1_c07590 are separated by 497 nucleotides
PGA1_c07570: PGA1_c07570 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT, at 781,316 to 782,332
_c07570
PGA1_c07580: PGA1_c07580 - glutathione-regulated potassium-efflux system protein KefC, at 782,400 to 784,292
_c07580
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 782.301 kb on + strand at 782.309 kb on - strand at 782.336 kb on + strand at 782.358 kb on - strand at 782.398 kb on - strand at 782.448 kb on - strand at 782.689 kb on + strand, within PGA1_c07580 at 782.697 kb on - strand, within PGA1_c07580 at 782.697 kb on - strand, within PGA1_c07580 at 782.725 kb on - strand, within PGA1_c07580 at 782.771 kb on + strand, within PGA1_c07580 at 782.786 kb on - strand, within PGA1_c07580 at 782.812 kb on + strand, within PGA1_c07580 at 782.818 kb on + strand, within PGA1_c07580 at 782.818 kb on + strand, within PGA1_c07580 at 782.826 kb on - strand, within PGA1_c07580 at 782.826 kb on - strand, within PGA1_c07580 at 782.851 kb on + strand, within PGA1_c07580 at 782.860 kb on - strand, within PGA1_c07580 at 782.860 kb on - strand, within PGA1_c07580 at 782.936 kb on - strand, within PGA1_c07580 at 782.941 kb on + strand, within PGA1_c07580 at 782.961 kb on + strand, within PGA1_c07580 at 782.963 kb on - strand, within PGA1_c07580 at 783.032 kb on + strand, within PGA1_c07580 at 783.032 kb on + strand, within PGA1_c07580 at 783.040 kb on - strand, within PGA1_c07580 at 783.040 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.066 kb on - strand, within PGA1_c07580 at 783.166 kb on + strand, within PGA1_c07580 at 783.166 kb on + strand, within PGA1_c07580 at 783.169 kb on - strand, within PGA1_c07580 at 783.218 kb on + strand, within PGA1_c07580 at 783.226 kb on - strand, within PGA1_c07580 at 783.233 kb on - strand, within PGA1_c07580 at 783.317 kb on + strand, within PGA1_c07580 at 783.325 kb on - strand, within PGA1_c07580 at 783.427 kb on - strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.583 kb on - strand, within PGA1_c07580 at 783.583 kb on - strand, within PGA1_c07580 at 783.621 kb on - strand, within PGA1_c07580 at 783.627 kb on - strand, within PGA1_c07580 at 783.627 kb on - strand, within PGA1_c07580 at 783.632 kb on - strand, within PGA1_c07580 at 783.647 kb on + strand, within PGA1_c07580 at 783.670 kb on + strand, within PGA1_c07580 at 783.683 kb on + strand, within PGA1_c07580 at 783.785 kb on - strand, within PGA1_c07580 at 783.884 kb on - strand, within PGA1_c07580 at 783.905 kb on - strand, within PGA1_c07580 at 783.922 kb on - strand, within PGA1_c07580 at 783.990 kb on + strand, within PGA1_c07580 at 783.998 kb on - strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.258 kb on + strand at 784.302 kb on - strand at 784.305 kb on + strand at 784.310 kb on + strand at 784.318 kb on - strand at 784.353 kb on + strand at 784.358 kb on + strand at 784.361 kb on - strand at 784.379 kb on - strand at 784.424 kb on + strand at 784.469 kb on + strand at 784.484 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.504 kb on - strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.514 kb on - strand at 784.519 kb on - strand at 784.568 kb on - strand at 784.578 kb on - strand at 784.592 kb on - strand at 784.615 kb on - strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.631 kb on + strand at 784.650 kb on + strand at 784.673 kb on + strand at 784.714 kb on - strand at 784.730 kb on - strand at 784.767 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.801 kb on - strand at 784.803 kb on - strand at 784.808 kb on + strand at 784.820 kb on - strand at 784.913 kb on - strand, within PGA1_c07590 at 784.923 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 785.118 kb on - strand, within PGA1_c07590 at 785.160 kb on - strand, within PGA1_c07590 at 785.168 kb on - strand, within PGA1_c07590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 782,301 + -0.5 782,309 - -0.5 782,336 + +0.3 782,358 - -0.1 782,398 - +0.5 782,448 - +1.8 782,689 + PGA1_c07580 0.15 -1.5 782,697 - PGA1_c07580 0.16 +0.3 782,697 - PGA1_c07580 0.16 -0.7 782,725 - PGA1_c07580 0.17 -0.9 782,771 + PGA1_c07580 0.20 +0.7 782,786 - PGA1_c07580 0.20 -0.5 782,812 + PGA1_c07580 0.22 -0.9 782,818 + PGA1_c07580 0.22 -1.6 782,818 + PGA1_c07580 0.22 -0.5 782,826 - PGA1_c07580 0.23 +0.7 782,826 - PGA1_c07580 0.23 -0.8 782,851 + PGA1_c07580 0.24 +0.3 782,860 - PGA1_c07580 0.24 -1.4 782,860 - PGA1_c07580 0.24 +1.9 782,936 - PGA1_c07580 0.28 -1.1 782,941 + PGA1_c07580 0.29 -1.8 782,961 + PGA1_c07580 0.30 -0.1 782,963 - PGA1_c07580 0.30 +0.4 783,032 + PGA1_c07580 0.33 -0.8 783,032 + PGA1_c07580 0.33 -1.4 783,040 - PGA1_c07580 0.34 -1.4 783,040 - PGA1_c07580 0.34 -0.2 783,055 - PGA1_c07580 0.35 +0.2 783,055 - PGA1_c07580 0.35 +0.7 783,055 - PGA1_c07580 0.35 -3.0 783,066 - PGA1_c07580 0.35 -0.6 783,166 + PGA1_c07580 0.40 +1.3 783,166 + PGA1_c07580 0.40 -0.6 783,169 - PGA1_c07580 0.41 -1.7 783,218 + PGA1_c07580 0.43 -0.5 783,226 - PGA1_c07580 0.44 -0.1 783,233 - PGA1_c07580 0.44 +0.2 783,317 + PGA1_c07580 0.48 -0.9 783,325 - PGA1_c07580 0.49 -1.7 783,427 - PGA1_c07580 0.54 -0.5 783,575 + PGA1_c07580 0.62 +0.2 783,575 + PGA1_c07580 0.62 +1.2 783,575 + PGA1_c07580 0.62 +0.2 783,575 + PGA1_c07580 0.62 +0.2 783,575 + PGA1_c07580 0.62 -0.4 783,575 + PGA1_c07580 0.62 -2.1 783,575 + PGA1_c07580 0.62 -1.2 783,575 + PGA1_c07580 0.62 -1.1 783,575 + PGA1_c07580 0.62 -0.1 783,583 - PGA1_c07580 0.62 -0.1 783,583 - PGA1_c07580 0.62 +0.4 783,621 - PGA1_c07580 0.65 -3.5 783,627 - PGA1_c07580 0.65 +1.2 783,627 - PGA1_c07580 0.65 +0.3 783,632 - PGA1_c07580 0.65 -0.0 783,647 + PGA1_c07580 0.66 -0.8 783,670 + PGA1_c07580 0.67 -0.9 783,683 + PGA1_c07580 0.68 -0.1 783,785 - PGA1_c07580 0.73 +0.1 783,884 - PGA1_c07580 0.78 -0.8 783,905 - PGA1_c07580 0.80 -1.1 783,922 - PGA1_c07580 0.80 -0.2 783,990 + PGA1_c07580 0.84 -0.9 783,998 - PGA1_c07580 0.84 -0.1 784,076 + PGA1_c07580 0.89 -3.0 784,076 + PGA1_c07580 0.89 -0.1 784,084 - PGA1_c07580 0.89 -0.1 784,084 - PGA1_c07580 0.89 -2.5 784,197 + +0.9 784,197 + +0.5 784,197 + +1.6 784,197 + +0.2 784,205 - -0.2 784,205 - +0.6 784,205 - +1.9 784,205 - +0.4 784,258 + +0.1 784,302 - -2.9 784,305 + +0.1 784,310 + -1.7 784,318 - -0.9 784,353 + -0.1 784,358 + -2.4 784,361 - -1.8 784,379 - -0.2 784,424 + -0.6 784,469 + -1.5 784,484 + -1.9 784,501 + -0.1 784,501 + +1.2 784,501 + -2.2 784,501 + -1.9 784,501 + +3.1 784,501 + +0.1 784,501 + -0.8 784,501 + -1.5 784,501 + -1.2 784,501 + -0.1 784,501 + -0.5 784,501 + -2.2 784,501 + +1.4 784,504 - +0.3 784,506 + -0.8 784,506 + -2.2 784,506 + +0.9 784,509 - -0.5 784,509 - -1.4 784,509 - +0.6 784,509 - +0.4 784,509 - -0.7 784,509 - -0.4 784,509 - -0.5 784,509 - +1.0 784,514 - +0.5 784,519 - -1.6 784,568 - +0.6 784,578 - +1.2 784,592 - +0.6 784,615 - +0.6 784,623 + +1.0 784,623 + +0.0 784,623 + -1.5 784,631 + -1.1 784,650 + -0.0 784,673 + +0.3 784,714 - -0.5 784,730 - -0.5 784,767 + +0.2 784,793 + +0.8 784,793 + +2.7 784,793 + +1.9 784,801 - -1.5 784,803 - -2.2 784,808 + +0.4 784,820 - +0.7 784,913 - PGA1_c07590 0.10 -2.4 784,923 - PGA1_c07590 0.11 +0.8 784,947 - PGA1_c07590 0.13 -0.3 784,947 - PGA1_c07590 0.13 -0.2 784,981 + PGA1_c07590 0.16 -0.7 784,981 + PGA1_c07590 0.16 -0.0 785,118 - PGA1_c07590 0.27 -0.4 785,160 - PGA1_c07590 0.30 -0.3 785,168 - PGA1_c07590 0.31 -1.1
Or see this region's nucleotide sequence