Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07460

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07440 and PGA1_c07450 are separated by 66 nucleotidesPGA1_c07450 and PGA1_c07460 are separated by 51 nucleotidesPGA1_c07460 and PGA1_c07465 are separated by 294 nucleotidesPGA1_c07465 and PGA1_c07470 are separated by 70 nucleotides PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885 _c07440 PGA1_c07450: PGA1_c07450 - putative NAD dependent epimerase/dehydratase, at 768,952 to 769,548 _c07450 PGA1_c07460: PGA1_c07460 - glutathione S-transferase domain-containing protein, at 769,600 to 770,214 _c07460 PGA1_c07465: PGA1_c07465 - putative dksA/traR C4-type zinc finger protein, at 770,509 to 770,778 _c07465 PGA1_c07470: PGA1_c07470 - putative oligoendopeptidase, at 770,849 to 772,693 _c07470 Position (kb) 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 768.715 kb on - strand, within PGA1_c07440at 768.732 kb on + strand, within PGA1_c07440at 768.734 kb on + strand, within PGA1_c07440at 768.790 kb on + strandat 768.790 kb on + strandat 768.881 kb on - strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.904 kb on - strandat 768.971 kb on - strandat 769.053 kb on - strand, within PGA1_c07450at 769.112 kb on - strand, within PGA1_c07450at 769.119 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.144 kb on + strand, within PGA1_c07450at 769.166 kb on + strand, within PGA1_c07450at 769.378 kb on - strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.464 kb on - strand, within PGA1_c07450at 769.477 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.525 kb on + strandat 769.619 kb on + strandat 769.625 kb on + strandat 769.633 kb on - strandat 769.633 kb on - strandat 769.678 kb on - strand, within PGA1_c07460at 769.686 kb on + strand, within PGA1_c07460at 769.694 kb on - strand, within PGA1_c07460at 769.801 kb on - strand, within PGA1_c07460at 769.819 kb on + strand, within PGA1_c07460at 769.827 kb on - strand, within PGA1_c07460at 769.836 kb on - strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.870 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.886 kb on + strand, within PGA1_c07460at 769.886 kb on - strand, within PGA1_c07460at 769.947 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.992 kb on + strand, within PGA1_c07460at 770.086 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.118 kb on + strand, within PGA1_c07460at 770.125 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.260 kb on - strandat 770.328 kb on + strandat 770.396 kb on + strandat 770.410 kb on - strandat 770.481 kb on + strandat 770.482 kb on + strandat 770.482 kb on + strandat 770.489 kb on - strandat 770.490 kb on - strandat 770.519 kb on - strandat 770.550 kb on + strand, within PGA1_c07465at 770.558 kb on - strand, within PGA1_c07465at 770.588 kb on + strand, within PGA1_c07465at 770.591 kb on - strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.759 kb on + strandat 770.767 kb on - strandat 770.847 kb on + strandat 770.955 kb on + strandat 770.965 kb on + strandat 771.012 kb on + strandat 771.022 kb on + strandat 771.022 kb on + strandat 771.075 kb on - strand, within PGA1_c07470at 771.117 kb on + strand, within PGA1_c07470at 771.145 kb on + strand, within PGA1_c07470at 771.154 kb on - strand, within PGA1_c07470at 771.180 kb on + strand, within PGA1_c07470at 771.182 kb on + strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.205 kb on - strand, within PGA1_c07470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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768,715 - PGA1_c07440 0.84 -0.7
768,732 + PGA1_c07440 0.85 -2.4
768,734 + PGA1_c07440 0.86 +1.1
768,790 + -0.5
768,790 + -0.7
768,881 - -1.7
768,896 + +0.5
768,896 + +0.3
768,896 + +0.4
768,904 - -1.4
768,971 - +0.8
769,053 - PGA1_c07450 0.17 -0.8
769,112 - PGA1_c07450 0.27 +0.7
769,119 + PGA1_c07450 0.28 -1.5
769,129 + PGA1_c07450 0.30 +0.1
769,129 + PGA1_c07450 0.30 -0.7
769,129 + PGA1_c07450 0.30 -0.7
769,129 + PGA1_c07450 0.30 +0.6
769,137 - PGA1_c07450 0.31 +0.8
769,137 - PGA1_c07450 0.31 +0.1
769,144 + PGA1_c07450 0.32 +0.2
769,166 + PGA1_c07450 0.36 +1.5
769,378 - PGA1_c07450 0.71 +0.4
769,456 + PGA1_c07450 0.84 +1.2
769,456 + PGA1_c07450 0.84 -0.4
769,464 - PGA1_c07450 0.86 +0.6
769,477 - PGA1_c07450 0.88 -1.4
769,478 - PGA1_c07450 0.88 +0.1
769,478 - PGA1_c07450 0.88 -0.1
769,525 + -0.8
769,619 + -1.5
769,625 + -0.2
769,633 - -0.1
769,633 - -1.7
769,678 - PGA1_c07460 0.13 +0.4
769,686 + PGA1_c07460 0.14 +0.3
769,694 - PGA1_c07460 0.15 -0.2
769,801 - PGA1_c07460 0.33 +0.4
769,819 + PGA1_c07460 0.36 -0.7
769,827 - PGA1_c07460 0.37 -2.7
769,836 - PGA1_c07460 0.38 +0.1
769,864 + PGA1_c07460 0.43 -0.4
769,864 + PGA1_c07460 0.43 -0.9
769,864 + PGA1_c07460 0.43 -0.3
769,864 + PGA1_c07460 0.43 -0.2
769,864 + PGA1_c07460 0.43 -0.0
769,870 - PGA1_c07460 0.44 -0.6
769,872 - PGA1_c07460 0.44 +0.8
769,872 - PGA1_c07460 0.44 +0.2
769,878 + PGA1_c07460 0.45 -0.7
769,878 + PGA1_c07460 0.45 -0.4
769,886 + PGA1_c07460 0.47 -0.4
769,886 - PGA1_c07460 0.47 -0.2
769,947 - PGA1_c07460 0.56 +0.2
769,965 - PGA1_c07460 0.59 -0.5
769,965 - PGA1_c07460 0.59 -1.2
769,992 + PGA1_c07460 0.64 -0.2
770,086 - PGA1_c07460 0.79 -0.7
770,100 - PGA1_c07460 0.81 -0.5
770,100 - PGA1_c07460 0.81 -0.6
770,118 + PGA1_c07460 0.84 -0.8
770,125 + PGA1_c07460 0.85 -0.9
770,135 + PGA1_c07460 0.87 -1.7
770,135 + PGA1_c07460 0.87 -1.7
770,135 + PGA1_c07460 0.87 -0.9
770,135 + PGA1_c07460 0.87 -2.1
770,135 + PGA1_c07460 0.87 -0.7
770,135 + PGA1_c07460 0.87 +1.4
770,135 + PGA1_c07460 0.87 -1.9
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 +1.7
770,135 + PGA1_c07460 0.87 -0.6
770,135 + PGA1_c07460 0.87 -0.5
770,135 + PGA1_c07460 0.87 -0.7
770,135 + PGA1_c07460 0.87 +0.6
770,135 + PGA1_c07460 0.87 -0.9
770,135 + PGA1_c07460 0.87 -0.8
770,135 + PGA1_c07460 0.87 +1.3
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 -1.5
770,135 + PGA1_c07460 0.87 +0.9
770,135 + PGA1_c07460 0.87 -0.5
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 -0.5
770,143 - PGA1_c07460 0.88 -1.0
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 -1.2
770,143 - PGA1_c07460 0.88 -0.5
770,143 - PGA1_c07460 0.88 +0.9
770,143 - PGA1_c07460 0.88 -0.1
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -1.7
770,143 - PGA1_c07460 0.88 -1.6
770,143 - PGA1_c07460 0.88 -2.1
770,143 - PGA1_c07460 0.88 -1.4
770,143 - PGA1_c07460 0.88 +0.8
770,143 - PGA1_c07460 0.88 -0.9
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -0.2
770,143 - PGA1_c07460 0.88 -2.9
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 -0.1
770,143 - PGA1_c07460 0.88 -0.1
770,143 - PGA1_c07460 0.88 -2.9
770,143 - PGA1_c07460 0.88 -1.7
770,143 - PGA1_c07460 0.88 -0.7
770,143 - PGA1_c07460 0.88 +1.3
770,143 - PGA1_c07460 0.88 -0.3
770,143 - PGA1_c07460 0.88 -1.7
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -1.2
770,143 - PGA1_c07460 0.88 -1.9
770,143 - PGA1_c07460 0.88 +0.7
770,260 - +0.2
770,328 + -1.6
770,396 + -0.5
770,410 - -0.3
770,481 + -0.3
770,482 + +0.3
770,482 + +1.3
770,489 - -0.8
770,490 - -1.4
770,519 - -0.3
770,550 + PGA1_c07465 0.15 -1.8
770,558 - PGA1_c07465 0.18 +0.6
770,588 + PGA1_c07465 0.29 -1.6
770,591 - PGA1_c07465 0.30 -0.3
770,615 + PGA1_c07465 0.39 -1.8
770,615 + PGA1_c07465 0.39 -1.1
770,693 - PGA1_c07465 0.68 +0.3
770,693 - PGA1_c07465 0.68 +1.1
770,738 + PGA1_c07465 0.85 +0.1
770,738 + PGA1_c07465 0.85 +0.6
770,738 + PGA1_c07465 0.85 +1.1
770,738 + PGA1_c07465 0.85 -1.1
770,746 - PGA1_c07465 0.88 +1.9
770,746 - PGA1_c07465 0.88 -0.7
770,746 - PGA1_c07465 0.88 +0.1
770,759 + -0.8
770,767 - -0.8
770,847 + -0.1
770,955 + -0.5
770,965 + +0.1
771,012 + -1.1
771,022 + -0.4
771,022 + +1.1
771,075 - PGA1_c07470 0.12 -0.1
771,117 + PGA1_c07470 0.15 -1.9
771,145 + PGA1_c07470 0.16 -0.3
771,154 - PGA1_c07470 0.17 +0.9
771,180 + PGA1_c07470 0.18 -0.3
771,182 + PGA1_c07470 0.18 -0.3
771,188 - PGA1_c07470 0.18 +1.2
771,188 - PGA1_c07470 0.18 -0.3
771,188 - PGA1_c07470 0.18 +0.3
771,205 - PGA1_c07470 0.19 -1.2

Or see this region's nucleotide sequence