Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07430

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07420 and PGA1_c07430 are separated by 134 nucleotidesPGA1_c07430 and PGA1_c07440 are separated by 18 nucleotides PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879 _c07420 PGA1_c07430: PGA1_c07430 - putative transcriptional regulator, IclR family, at 767,014 to 767,805 _c07430 PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885 _c07440 Position (kb) 767 768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 766.046 kb on + strand, within PGA1_c07420at 766.051 kb on + strand, within PGA1_c07420at 766.051 kb on + strand, within PGA1_c07420at 766.124 kb on + strand, within PGA1_c07420at 766.151 kb on - strand, within PGA1_c07420at 766.157 kb on - strand, within PGA1_c07420at 766.194 kb on - strand, within PGA1_c07420at 766.222 kb on + strand, within PGA1_c07420at 766.250 kb on - strand, within PGA1_c07420at 766.255 kb on - strand, within PGA1_c07420at 766.265 kb on + strand, within PGA1_c07420at 766.314 kb on + strand, within PGA1_c07420at 766.374 kb on - strand, within PGA1_c07420at 766.387 kb on + strand, within PGA1_c07420at 766.405 kb on - strand, within PGA1_c07420at 766.408 kb on + strand, within PGA1_c07420at 766.408 kb on + strand, within PGA1_c07420at 766.408 kb on + strand, within PGA1_c07420at 766.416 kb on - strand, within PGA1_c07420at 766.416 kb on - strand, within PGA1_c07420at 766.416 kb on - strand, within PGA1_c07420at 766.423 kb on + strand, within PGA1_c07420at 766.435 kb on + strand, within PGA1_c07420at 766.443 kb on - strand, within PGA1_c07420at 766.459 kb on + strand, within PGA1_c07420at 766.466 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.467 kb on + strand, within PGA1_c07420at 766.474 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.475 kb on - strand, within PGA1_c07420at 766.515 kb on + strand, within PGA1_c07420at 766.520 kb on + strand, within PGA1_c07420at 766.548 kb on + strand, within PGA1_c07420at 766.595 kb on - strand, within PGA1_c07420at 766.667 kb on + strand, within PGA1_c07420at 766.690 kb on + strand, within PGA1_c07420at 766.762 kb on + strandat 766.767 kb on + strandat 766.767 kb on + strandat 766.768 kb on - strandat 766.816 kb on + strandat 766.826 kb on + strandat 766.826 kb on + strandat 766.831 kb on + strandat 766.831 kb on + strandat 766.834 kb on - strandat 766.834 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.983 kb on - strandat 767.000 kb on + strandat 767.011 kb on + strandat 767.140 kb on - strand, within PGA1_c07430at 767.162 kb on + strand, within PGA1_c07430at 767.292 kb on - strand, within PGA1_c07430at 767.315 kb on + strand, within PGA1_c07430at 767.357 kb on - strand, within PGA1_c07430at 767.412 kb on + strand, within PGA1_c07430at 767.432 kb on + strand, within PGA1_c07430at 767.482 kb on + strand, within PGA1_c07430at 767.533 kb on + strand, within PGA1_c07430at 767.540 kb on + strand, within PGA1_c07430at 767.541 kb on - strand, within PGA1_c07430at 767.559 kb on - strand, within PGA1_c07430at 767.607 kb on - strand, within PGA1_c07430at 767.657 kb on - strand, within PGA1_c07430at 767.756 kb on + strandat 767.779 kb on + strandat 767.814 kb on - strandat 767.841 kb on + strandat 767.940 kb on - strand, within PGA1_c07440at 767.988 kb on - strand, within PGA1_c07440at 768.018 kb on + strand, within PGA1_c07440at 768.024 kb on + strand, within PGA1_c07440at 768.083 kb on + strand, within PGA1_c07440at 768.092 kb on + strand, within PGA1_c07440at 768.110 kb on - strand, within PGA1_c07440at 768.221 kb on - strand, within PGA1_c07440at 768.250 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.283 kb on - strand, within PGA1_c07440at 768.309 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.384 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.403 kb on - strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.455 kb on + strand, within PGA1_c07440at 768.460 kb on + strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.465 kb on + strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.554 kb on + strand, within PGA1_c07440at 768.572 kb on - strand, within PGA1_c07440at 768.589 kb on + strand, within PGA1_c07440at 768.715 kb on - strand, within PGA1_c07440at 768.732 kb on + strand, within PGA1_c07440at 768.734 kb on + strand, within PGA1_c07440at 768.790 kb on + strandat 768.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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766,046 + PGA1_c07420 0.33 +0.8
766,051 + PGA1_c07420 0.34 +0.0
766,051 + PGA1_c07420 0.34 -0.3
766,124 + PGA1_c07420 0.40 -0.2
766,151 - PGA1_c07420 0.42 -0.3
766,157 - PGA1_c07420 0.42 -0.3
766,194 - PGA1_c07420 0.45 +1.4
766,222 + PGA1_c07420 0.47 +0.7
766,250 - PGA1_c07420 0.50 +0.2
766,255 - PGA1_c07420 0.50 +0.0
766,265 + PGA1_c07420 0.51 -0.1
766,314 + PGA1_c07420 0.55 -2.2
766,374 - PGA1_c07420 0.60 -0.2
766,387 + PGA1_c07420 0.61 -0.8
766,405 - PGA1_c07420 0.62 -0.1
766,408 + PGA1_c07420 0.62 +0.2
766,408 + PGA1_c07420 0.62 +0.3
766,408 + PGA1_c07420 0.62 -0.7
766,416 - PGA1_c07420 0.63 +0.3
766,416 - PGA1_c07420 0.63 +0.0
766,416 - PGA1_c07420 0.63 +2.0
766,423 + PGA1_c07420 0.63 +0.1
766,435 + PGA1_c07420 0.64 -0.4
766,443 - PGA1_c07420 0.65 -2.5
766,459 + PGA1_c07420 0.66 -0.9
766,466 + PGA1_c07420 0.67 -0.6
766,467 + PGA1_c07420 0.67 +1.7
766,467 + PGA1_c07420 0.67 +1.2
766,467 + PGA1_c07420 0.67 -2.9
766,467 + PGA1_c07420 0.67 -1.2
766,467 + PGA1_c07420 0.67 +0.3
766,467 + PGA1_c07420 0.67 -1.9
766,467 + PGA1_c07420 0.67 -0.1
766,467 + PGA1_c07420 0.67 -0.7
766,467 + PGA1_c07420 0.67 -2.1
766,474 - PGA1_c07420 0.68 -0.8
766,475 - PGA1_c07420 0.68 +0.1
766,475 - PGA1_c07420 0.68 +0.5
766,475 - PGA1_c07420 0.68 +0.0
766,475 - PGA1_c07420 0.68 -0.6
766,475 - PGA1_c07420 0.68 +1.9
766,475 - PGA1_c07420 0.68 -0.7
766,515 + PGA1_c07420 0.71 -0.9
766,520 + PGA1_c07420 0.71 -1.2
766,548 + PGA1_c07420 0.73 -4.0
766,595 - PGA1_c07420 0.77 -2.5
766,667 + PGA1_c07420 0.83 +0.9
766,690 + PGA1_c07420 0.85 +0.5
766,762 + +0.9
766,767 + -0.6
766,767 + -0.7
766,768 - +0.6
766,816 + +0.5
766,826 + +0.2
766,826 + +0.1
766,831 + -0.2
766,831 + +0.4
766,834 - -1.0
766,834 - -1.5
766,839 - -1.5
766,839 - +1.1
766,839 - +0.2
766,839 - -0.4
766,839 - -0.4
766,839 - -2.3
766,983 - -0.3
767,000 + +0.1
767,011 + -2.5
767,140 - PGA1_c07430 0.16 +0.0
767,162 + PGA1_c07430 0.19 +0.3
767,292 - PGA1_c07430 0.35 -1.3
767,315 + PGA1_c07430 0.38 -0.4
767,357 - PGA1_c07430 0.43 -0.1
767,412 + PGA1_c07430 0.50 +0.1
767,432 + PGA1_c07430 0.53 -0.9
767,482 + PGA1_c07430 0.59 -1.3
767,533 + PGA1_c07430 0.66 -0.2
767,540 + PGA1_c07430 0.66 -1.1
767,541 - PGA1_c07430 0.67 -0.7
767,559 - PGA1_c07430 0.69 -2.1
767,607 - PGA1_c07430 0.75 +0.4
767,657 - PGA1_c07430 0.81 +0.7
767,756 + -0.5
767,779 + -1.4
767,814 - +2.2
767,841 + +0.3
767,940 - PGA1_c07440 0.11 -1.1
767,988 - PGA1_c07440 0.15 -1.3
768,018 + PGA1_c07440 0.18 +0.1
768,024 + PGA1_c07440 0.19 +0.9
768,083 + PGA1_c07440 0.24 -1.0
768,092 + PGA1_c07440 0.25 +0.7
768,110 - PGA1_c07440 0.27 -0.2
768,221 - PGA1_c07440 0.37 -1.5
768,250 + PGA1_c07440 0.40 -1.1
768,275 + PGA1_c07440 0.42 +0.3
768,275 + PGA1_c07440 0.42 -0.6
768,275 + PGA1_c07440 0.42 -0.2
768,275 + PGA1_c07440 0.42 -0.0
768,275 + PGA1_c07440 0.42 -0.4
768,283 - PGA1_c07440 0.43 -0.5
768,309 - PGA1_c07440 0.46 -0.3
768,314 - PGA1_c07440 0.46 +0.5
768,314 - PGA1_c07440 0.46 -1.6
768,384 + PGA1_c07440 0.53 -0.3
768,395 + PGA1_c07440 0.54 -0.3
768,395 + PGA1_c07440 0.54 -0.3
768,395 + PGA1_c07440 0.54 +0.7
768,403 - PGA1_c07440 0.55 +0.8
768,405 + PGA1_c07440 0.55 -0.4
768,405 + PGA1_c07440 0.55 -0.3
768,405 + PGA1_c07440 0.55 -0.1
768,455 + PGA1_c07440 0.59 -0.1
768,460 + PGA1_c07440 0.60 -0.2
768,463 - PGA1_c07440 0.60 -0.7
768,463 - PGA1_c07440 0.60 -0.1
768,463 - PGA1_c07440 0.60 -0.3
768,465 + PGA1_c07440 0.60 +0.3
768,534 - PGA1_c07440 0.67 -0.4
768,534 - PGA1_c07440 0.67 +0.3
768,554 + PGA1_c07440 0.69 -1.1
768,572 - PGA1_c07440 0.70 -0.7
768,589 + PGA1_c07440 0.72 +1.3
768,715 - PGA1_c07440 0.84 -0.7
768,732 + PGA1_c07440 0.85 -2.4
768,734 + PGA1_c07440 0.86 +1.1
768,790 + -0.5
768,790 + -0.7

Or see this region's nucleotide sequence