Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07380 and PGA1_c07390 overlap by 4 nucleotides PGA1_c07390 and PGA1_c07400 overlap by 4 nucleotides PGA1_c07400 and PGA1_c07410 overlap by 1 nucleotides
PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590
_c07380
PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686
_c07390
PGA1_c07400: PGA1_c07400 - binding protein dependent transport system permease, at 763,683 to 764,531
_c07400
PGA1_c07410: PGA1_c07410 - binding protein dependent transport system permease, at 764,531 to 765,478
_c07410
Position (kb) 761
762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 760.589 kb on - strand, within PGA1_c07380 at 760.648 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.737 kb on - strand, within PGA1_c07380 at 760.792 kb on + strand, within PGA1_c07380 at 760.832 kb on + strand, within PGA1_c07380 at 760.848 kb on - strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.123 kb on + strand, within PGA1_c07380 at 761.123 kb on - strand, within PGA1_c07380 at 761.142 kb on - strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.157 kb on - strand, within PGA1_c07380 at 761.163 kb on - strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.204 kb on - strand, within PGA1_c07380 at 761.207 kb on - strand, within PGA1_c07380 at 761.212 kb on - strand, within PGA1_c07380 at 761.245 kb on - strand, within PGA1_c07380 at 761.250 kb on - strand, within PGA1_c07380 at 761.429 kb on + strand at 761.443 kb on + strand at 761.456 kb on - strand at 761.530 kb on + strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.629 kb on + strand at 761.630 kb on + strand at 761.635 kb on + strand at 761.637 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.718 kb on + strand at 761.760 kb on + strand at 761.800 kb on - strand, within PGA1_c07390 at 761.834 kb on - strand, within PGA1_c07390 at 761.849 kb on + strand, within PGA1_c07390 at 761.857 kb on - strand, within PGA1_c07390 at 761.905 kb on - strand, within PGA1_c07390 at 761.953 kb on - strand, within PGA1_c07390 at 761.955 kb on + strand, within PGA1_c07390 at 762.033 kb on - strand, within PGA1_c07390 at 762.046 kb on - strand, within PGA1_c07390 at 762.069 kb on + strand, within PGA1_c07390 at 762.077 kb on - strand, within PGA1_c07390 at 762.168 kb on + strand, within PGA1_c07390 at 762.271 kb on - strand, within PGA1_c07390 at 762.292 kb on - strand, within PGA1_c07390 at 762.313 kb on - strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.330 kb on - strand, within PGA1_c07390 at 762.364 kb on + strand, within PGA1_c07390 at 762.372 kb on - strand, within PGA1_c07390 at 762.389 kb on + strand, within PGA1_c07390 at 762.397 kb on - strand, within PGA1_c07390 at 762.407 kb on + strand, within PGA1_c07390 at 762.412 kb on + strand, within PGA1_c07390 at 762.420 kb on - strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.458 kb on + strand, within PGA1_c07390 at 762.463 kb on + strand, within PGA1_c07390 at 762.466 kb on - strand, within PGA1_c07390 at 762.471 kb on - strand, within PGA1_c07390 at 762.486 kb on - strand, within PGA1_c07390 at 762.494 kb on + strand, within PGA1_c07390 at 762.526 kb on + strand, within PGA1_c07390 at 762.537 kb on + strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.577 kb on - strand, within PGA1_c07390 at 762.586 kb on - strand, within PGA1_c07390 at 762.648 kb on - strand, within PGA1_c07390 at 762.662 kb on - strand, within PGA1_c07390 at 762.692 kb on - strand, within PGA1_c07390 at 762.693 kb on + strand, within PGA1_c07390 at 762.739 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.803 kb on + strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.811 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.895 kb on - strand, within PGA1_c07390 at 762.900 kb on - strand, within PGA1_c07390 at 763.009 kb on - strand, within PGA1_c07390 at 763.026 kb on - strand, within PGA1_c07390 at 763.043 kb on - strand, within PGA1_c07390 at 763.045 kb on + strand, within PGA1_c07390 at 763.069 kb on + strand, within PGA1_c07390 at 763.112 kb on - strand, within PGA1_c07390 at 763.135 kb on + strand, within PGA1_c07390 at 763.143 kb on - strand, within PGA1_c07390 at 763.143 kb on - strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.204 kb on + strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.212 kb on - strand, within PGA1_c07390 at 763.239 kb on + strand, within PGA1_c07390 at 763.265 kb on - strand, within PGA1_c07390 at 763.285 kb on + strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.293 kb on - strand, within PGA1_c07390 at 763.359 kb on + strand, within PGA1_c07390 at 763.360 kb on + strand, within PGA1_c07390 at 763.367 kb on - strand, within PGA1_c07390 at 763.374 kb on - strand, within PGA1_c07390 at 763.379 kb on - strand, within PGA1_c07390 at 763.413 kb on - strand, within PGA1_c07390 at 763.519 kb on + strand at 763.694 kb on - strand at 763.704 kb on - strand at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.782 kb on + strand, within PGA1_c07400 at 763.806 kb on - strand, within PGA1_c07400 at 763.829 kb on - strand, within PGA1_c07400 at 763.845 kb on + strand, within PGA1_c07400 at 763.941 kb on - strand, within PGA1_c07400 at 763.944 kb on + strand, within PGA1_c07400 at 763.952 kb on - strand, within PGA1_c07400 at 763.957 kb on + strand, within PGA1_c07400 at 763.992 kb on - strand, within PGA1_c07400 at 763.999 kb on + strand, within PGA1_c07400 at 764.046 kb on - strand, within PGA1_c07400 at 764.048 kb on - strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.084 kb on + strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.236 kb on - strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.242 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.247 kb on + strand, within PGA1_c07400 at 764.250 kb on - strand, within PGA1_c07400 at 764.252 kb on + strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.255 kb on - strand, within PGA1_c07400 at 764.283 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.288 kb on + strand, within PGA1_c07400 at 764.291 kb on - strand, within PGA1_c07400 at 764.293 kb on + strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.296 kb on - strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.354 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.357 kb on + strand, within PGA1_c07400 at 764.362 kb on - strand, within PGA1_c07400 at 764.365 kb on - strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.372 kb on + strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.380 kb on - strand, within PGA1_c07400 at 764.382 kb on + strand, within PGA1_c07400 at 764.382 kb on - strand, within PGA1_c07400 at 764.389 kb on - strand, within PGA1_c07400 at 764.474 kb on + strand at 764.477 kb on + strand at 764.493 kb on - strand at 764.508 kb on + strand at 764.508 kb on + strand at 764.516 kb on - strand at 764.537 kb on - strand at 764.549 kb on - strand at 764.580 kb on + strand at 764.608 kb on - strand at 764.624 kb on + strand at 764.630 kb on + strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410 at 764.632 kb on - strand, within PGA1_c07410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 760,589 - PGA1_c07380 0.42 -2.0 760,648 - PGA1_c07380 0.45 +0.2 760,716 - PGA1_c07380 0.49 -1.2 760,716 - PGA1_c07380 0.49 +0.3 760,737 - PGA1_c07380 0.50 -0.9 760,792 + PGA1_c07380 0.53 +0.2 760,832 + PGA1_c07380 0.56 -0.5 760,848 - PGA1_c07380 0.57 -0.2 760,916 + PGA1_c07380 0.61 +0.6 760,916 + PGA1_c07380 0.61 +1.0 761,027 + PGA1_c07380 0.67 -0.2 761,027 + PGA1_c07380 0.67 -0.5 761,027 + PGA1_c07380 0.67 +0.3 761,123 + PGA1_c07380 0.73 +0.1 761,123 - PGA1_c07380 0.73 -0.9 761,142 - PGA1_c07380 0.74 -0.6 761,155 + PGA1_c07380 0.75 +0.3 761,155 + PGA1_c07380 0.75 +0.4 761,155 + PGA1_c07380 0.75 -1.1 761,157 - PGA1_c07380 0.75 -0.0 761,163 - PGA1_c07380 0.75 +0.1 761,199 + PGA1_c07380 0.77 +0.3 761,199 + PGA1_c07380 0.77 -0.2 761,204 - PGA1_c07380 0.77 -2.5 761,207 - PGA1_c07380 0.78 -0.5 761,212 - PGA1_c07380 0.78 -0.7 761,245 - PGA1_c07380 0.80 -0.1 761,250 - PGA1_c07380 0.80 -0.1 761,429 + +0.7 761,443 + -0.1 761,456 - +0.3 761,530 + +0.4 761,593 - -1.3 761,593 - -0.3 761,629 + -0.3 761,630 + -0.8 761,635 + +1.1 761,637 - -0.8 761,638 - -0.7 761,638 - -0.1 761,638 - -0.3 761,638 - +0.5 761,718 + -0.1 761,760 + -0.7 761,800 - PGA1_c07390 0.10 -1.1 761,834 - PGA1_c07390 0.12 -0.1 761,849 + PGA1_c07390 0.12 -0.2 761,857 - PGA1_c07390 0.13 -0.5 761,905 - PGA1_c07390 0.15 -1.1 761,953 - PGA1_c07390 0.17 -0.3 761,955 + PGA1_c07390 0.18 -2.1 762,033 - PGA1_c07390 0.21 -0.9 762,046 - PGA1_c07390 0.22 +0.5 762,069 + PGA1_c07390 0.23 -0.8 762,077 - PGA1_c07390 0.23 -0.1 762,168 + PGA1_c07390 0.28 -0.8 762,271 - PGA1_c07390 0.33 +0.9 762,292 - PGA1_c07390 0.34 -1.2 762,313 - PGA1_c07390 0.35 -1.7 762,322 + PGA1_c07390 0.35 -0.7 762,322 + PGA1_c07390 0.35 +0.0 762,322 + PGA1_c07390 0.35 -0.3 762,330 - PGA1_c07390 0.35 -0.8 762,364 + PGA1_c07390 0.37 -1.7 762,372 - PGA1_c07390 0.37 -1.9 762,389 + PGA1_c07390 0.38 -0.7 762,397 - PGA1_c07390 0.39 -0.3 762,407 + PGA1_c07390 0.39 -1.8 762,412 + PGA1_c07390 0.39 +0.0 762,420 - PGA1_c07390 0.40 +0.0 762,457 + PGA1_c07390 0.41 -0.1 762,457 + PGA1_c07390 0.41 +0.3 762,458 + PGA1_c07390 0.41 -0.8 762,463 + PGA1_c07390 0.42 +0.4 762,466 - PGA1_c07390 0.42 -0.2 762,471 - PGA1_c07390 0.42 -0.1 762,486 - PGA1_c07390 0.43 -0.4 762,494 + PGA1_c07390 0.43 -0.4 762,526 + PGA1_c07390 0.45 -2.4 762,537 + PGA1_c07390 0.45 -1.5 762,545 - PGA1_c07390 0.46 -0.3 762,545 - PGA1_c07390 0.46 +0.4 762,577 - PGA1_c07390 0.47 +0.4 762,586 - PGA1_c07390 0.48 -0.3 762,648 - PGA1_c07390 0.51 -2.5 762,662 - PGA1_c07390 0.51 -1.7 762,692 - PGA1_c07390 0.53 -0.3 762,693 + PGA1_c07390 0.53 -0.9 762,739 + PGA1_c07390 0.55 -3.0 762,803 + PGA1_c07390 0.58 +1.7 762,803 + PGA1_c07390 0.58 -0.1 762,803 + PGA1_c07390 0.58 +0.1 762,803 + PGA1_c07390 0.58 -0.2 762,803 + PGA1_c07390 0.58 +0.2 762,811 - PGA1_c07390 0.58 -0.5 762,811 - PGA1_c07390 0.58 -0.4 762,811 - PGA1_c07390 0.58 -1.8 762,811 - PGA1_c07390 0.58 -1.2 762,811 - PGA1_c07390 0.58 -1.1 762,811 - PGA1_c07390 0.58 -0.7 762,895 - PGA1_c07390 0.62 -0.5 762,895 - PGA1_c07390 0.62 +0.6 762,895 - PGA1_c07390 0.62 -0.2 762,900 - PGA1_c07390 0.63 +0.2 763,009 - PGA1_c07390 0.68 -0.5 763,026 - PGA1_c07390 0.69 -0.8 763,043 - PGA1_c07390 0.69 +0.1 763,045 + PGA1_c07390 0.69 -1.5 763,069 + PGA1_c07390 0.71 -0.6 763,112 - PGA1_c07390 0.73 +1.6 763,135 + PGA1_c07390 0.74 -0.8 763,143 - PGA1_c07390 0.74 +0.9 763,143 - PGA1_c07390 0.74 -1.9 763,204 + PGA1_c07390 0.77 +0.2 763,204 + PGA1_c07390 0.77 -0.1 763,204 + PGA1_c07390 0.77 +0.7 763,204 + PGA1_c07390 0.77 +0.4 763,212 - PGA1_c07390 0.77 -3.2 763,212 - PGA1_c07390 0.77 +0.8 763,212 - PGA1_c07390 0.77 +0.8 763,239 + PGA1_c07390 0.79 -0.2 763,265 - PGA1_c07390 0.80 -0.1 763,285 + PGA1_c07390 0.81 -1.5 763,293 - PGA1_c07390 0.81 -0.9 763,293 - PGA1_c07390 0.81 -0.1 763,293 - PGA1_c07390 0.81 +0.5 763,359 + PGA1_c07390 0.84 -1.1 763,360 + PGA1_c07390 0.84 +0.2 763,367 - PGA1_c07390 0.85 -0.7 763,374 - PGA1_c07390 0.85 +0.8 763,379 - PGA1_c07390 0.85 -2.6 763,413 - PGA1_c07390 0.87 +0.5 763,519 + -1.1 763,694 - -1.2 763,704 - -0.5 763,782 + PGA1_c07400 0.12 -0.6 763,782 + PGA1_c07400 0.12 -0.9 763,782 + PGA1_c07400 0.12 +0.2 763,806 - PGA1_c07400 0.14 +0.3 763,829 - PGA1_c07400 0.17 -0.9 763,845 + PGA1_c07400 0.19 -0.1 763,941 - PGA1_c07400 0.30 +0.2 763,944 + PGA1_c07400 0.31 -0.9 763,952 - PGA1_c07400 0.32 -1.3 763,957 + PGA1_c07400 0.32 +0.4 763,992 - PGA1_c07400 0.36 -0.3 763,999 + PGA1_c07400 0.37 -1.1 764,046 - PGA1_c07400 0.43 -2.2 764,048 - PGA1_c07400 0.43 -0.1 764,084 + PGA1_c07400 0.47 +0.2 764,084 + PGA1_c07400 0.47 -1.3 764,236 - PGA1_c07400 0.65 -0.6 764,236 - PGA1_c07400 0.65 -0.3 764,236 - PGA1_c07400 0.65 -0.6 764,242 + PGA1_c07400 0.66 -0.2 764,242 + PGA1_c07400 0.66 +0.4 764,247 + PGA1_c07400 0.66 -1.7 764,247 + PGA1_c07400 0.66 +0.2 764,247 + PGA1_c07400 0.66 +0.0 764,247 + PGA1_c07400 0.66 +0.1 764,247 + PGA1_c07400 0.66 +0.6 764,250 - PGA1_c07400 0.67 +0.2 764,252 + PGA1_c07400 0.67 -0.4 764,255 - PGA1_c07400 0.67 -0.4 764,255 - PGA1_c07400 0.67 -0.6 764,255 - PGA1_c07400 0.67 -1.4 764,283 + PGA1_c07400 0.71 -1.4 764,288 + PGA1_c07400 0.71 -0.1 764,288 + PGA1_c07400 0.71 -2.3 764,288 + PGA1_c07400 0.71 -0.5 764,288 + PGA1_c07400 0.71 -1.4 764,291 - PGA1_c07400 0.72 +0.2 764,293 + PGA1_c07400 0.72 -2.2 764,296 - PGA1_c07400 0.72 +1.1 764,296 - PGA1_c07400 0.72 -2.9 764,354 + PGA1_c07400 0.79 +0.4 764,354 + PGA1_c07400 0.79 -0.1 764,354 + PGA1_c07400 0.79 -0.3 764,354 + PGA1_c07400 0.79 +0.1 764,357 + PGA1_c07400 0.79 +0.9 764,357 + PGA1_c07400 0.79 +0.6 764,357 + PGA1_c07400 0.79 +0.9 764,362 - PGA1_c07400 0.80 -1.6 764,365 - PGA1_c07400 0.80 -0.1 764,372 + PGA1_c07400 0.81 -0.4 764,372 + PGA1_c07400 0.81 -1.0 764,372 + PGA1_c07400 0.81 -1.1 764,372 + PGA1_c07400 0.81 +1.3 764,372 + PGA1_c07400 0.81 -0.9 764,372 + PGA1_c07400 0.81 +0.4 764,372 + PGA1_c07400 0.81 -1.6 764,380 - PGA1_c07400 0.82 -1.2 764,380 - PGA1_c07400 0.82 +1.1 764,380 - PGA1_c07400 0.82 -2.1 764,380 - PGA1_c07400 0.82 -0.2 764,380 - PGA1_c07400 0.82 +0.4 764,380 - PGA1_c07400 0.82 -0.6 764,382 + PGA1_c07400 0.82 +0.2 764,382 - PGA1_c07400 0.82 -0.6 764,389 - PGA1_c07400 0.83 -0.5 764,474 + -0.4 764,477 + -1.2 764,493 - +0.7 764,508 + +0.5 764,508 + -2.1 764,516 - -0.8 764,537 - +0.4 764,549 - -1.1 764,580 + -0.4 764,608 - +0.7 764,624 + -0.8 764,630 + PGA1_c07410 0.10 -2.1 764,632 - PGA1_c07410 0.11 +0.8 764,632 - PGA1_c07410 0.11 +0.1
Or see this region's nucleotide sequence