Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07220 and PGA1_c07230 overlap by 4 nucleotides PGA1_c07230 and PGA1_c07240 are separated by 12 nucleotides PGA1_c07240 and PGA1_c07250 overlap by 1 nucleotides
PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data) , at 742,583 to 743,422
_c07220
PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) , at 743,419 to 744,276
_c07230
PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data) , at 744,289 to 745,281
_c07240
PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) , at 745,281 to 747,155
_c07250
Position (kb)
744
745
746 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 743.340 kb on - strand at 743.373 kb on + strand at 743.467 kb on - strand at 743.511 kb on + strand, within PGA1_c07230 at 743.512 kb on + strand, within PGA1_c07230 at 743.519 kb on - strand, within PGA1_c07230 at 743.564 kb on + strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.572 kb on - strand, within PGA1_c07230 at 743.614 kb on - strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.630 kb on + strand, within PGA1_c07230 at 743.666 kb on - strand, within PGA1_c07230 at 743.780 kb on + strand, within PGA1_c07230 at 743.795 kb on + strand, within PGA1_c07230 at 743.805 kb on + strand, within PGA1_c07230 at 743.876 kb on + strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.884 kb on - strand, within PGA1_c07230 at 743.886 kb on + strand, within PGA1_c07230 at 743.894 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.904 kb on - strand, within PGA1_c07230 at 743.936 kb on - strand, within PGA1_c07230 at 744.035 kb on + strand, within PGA1_c07230 at 744.078 kb on + strand, within PGA1_c07230 at 744.083 kb on + strand, within PGA1_c07230 at 744.088 kb on + strand, within PGA1_c07230 at 744.096 kb on - strand, within PGA1_c07230 at 744.134 kb on + strand, within PGA1_c07230 at 744.139 kb on + strand, within PGA1_c07230 at 744.162 kb on + strand, within PGA1_c07230 at 744.170 kb on - strand, within PGA1_c07230 at 744.177 kb on - strand, within PGA1_c07230 at 744.184 kb on - strand, within PGA1_c07230 at 744.186 kb on + strand, within PGA1_c07230 at 744.194 kb on - strand at 744.310 kb on - strand at 744.352 kb on + strand at 744.376 kb on - strand at 744.442 kb on - strand, within PGA1_c07240 at 744.571 kb on + strand, within PGA1_c07240 at 744.627 kb on - strand, within PGA1_c07240 at 744.723 kb on - strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.740 kb on + strand, within PGA1_c07240 at 744.741 kb on - strand, within PGA1_c07240 at 744.789 kb on + strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.827 kb on + strand, within PGA1_c07240 at 744.853 kb on - strand, within PGA1_c07240 at 744.862 kb on + strand, within PGA1_c07240 at 744.870 kb on - strand, within PGA1_c07240 at 744.889 kb on - strand, within PGA1_c07240 at 744.944 kb on - strand, within PGA1_c07240 at 744.969 kb on + strand, within PGA1_c07240 at 745.017 kb on + strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.051 kb on + strand, within PGA1_c07240 at 745.079 kb on + strand, within PGA1_c07240 at 745.089 kb on + strand, within PGA1_c07240 at 745.206 kb on + strand at 745.206 kb on + strand at 745.206 kb on + strand at 745.214 kb on - strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.288 kb on + strand at 745.296 kb on - strand at 745.383 kb on + strand at 745.398 kb on + strand at 745.406 kb on - strand at 745.462 kb on + strand at 745.470 kb on - strand, within PGA1_c07250 at 745.501 kb on + strand, within PGA1_c07250 at 745.509 kb on - strand, within PGA1_c07250 at 745.514 kb on + strand, within PGA1_c07250 at 745.518 kb on + strand, within PGA1_c07250 at 745.526 kb on - strand, within PGA1_c07250 at 745.564 kb on - strand, within PGA1_c07250 at 745.573 kb on - strand, within PGA1_c07250 at 745.617 kb on - strand, within PGA1_c07250 at 745.634 kb on + strand, within PGA1_c07250 at 745.696 kb on - strand, within PGA1_c07250 at 745.740 kb on + strand, within PGA1_c07250 at 745.765 kb on + strand, within PGA1_c07250 at 745.767 kb on - strand, within PGA1_c07250 at 745.792 kb on - strand, within PGA1_c07250 at 745.861 kb on - strand, within PGA1_c07250 at 745.907 kb on + strand, within PGA1_c07250 at 745.917 kb on + strand, within PGA1_c07250 at 745.958 kb on + strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 746.003 kb on + strand, within PGA1_c07250 at 746.047 kb on + strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.083 kb on + strand, within PGA1_c07250 at 746.151 kb on + strand, within PGA1_c07250 at 746.189 kb on + strand, within PGA1_c07250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 743,340 - -1.1 743,373 + -1.1 743,467 - -0.5 743,511 + PGA1_c07230 0.11 -0.2 743,512 + PGA1_c07230 0.11 -1.1 743,519 - PGA1_c07230 0.12 -0.4 743,564 + PGA1_c07230 0.17 -1.3 743,572 - PGA1_c07230 0.18 -1.1 743,572 - PGA1_c07230 0.18 -0.8 743,614 - PGA1_c07230 0.23 -0.7 743,630 + PGA1_c07230 0.25 -0.6 743,630 + PGA1_c07230 0.25 -2.1 743,666 - PGA1_c07230 0.29 -0.6 743,780 + PGA1_c07230 0.42 -0.8 743,795 + PGA1_c07230 0.44 -1.5 743,805 + PGA1_c07230 0.45 -0.3 743,876 + PGA1_c07230 0.53 -0.1 743,884 - PGA1_c07230 0.54 -0.2 743,884 - PGA1_c07230 0.54 +0.9 743,886 + PGA1_c07230 0.54 +0.7 743,894 - PGA1_c07230 0.55 +0.4 743,904 - PGA1_c07230 0.57 -0.3 743,904 - PGA1_c07230 0.57 -0.1 743,904 - PGA1_c07230 0.57 +0.5 743,904 - PGA1_c07230 0.57 -0.4 743,904 - PGA1_c07230 0.57 -0.5 743,936 - PGA1_c07230 0.60 +0.1 744,035 + PGA1_c07230 0.72 -3.3 744,078 + PGA1_c07230 0.77 +0.2 744,083 + PGA1_c07230 0.77 +0.5 744,088 + PGA1_c07230 0.78 -0.8 744,096 - PGA1_c07230 0.79 +2.3 744,134 + PGA1_c07230 0.83 -0.3 744,139 + PGA1_c07230 0.84 -0.0 744,162 + PGA1_c07230 0.87 -0.7 744,170 - PGA1_c07230 0.88 +0.4 744,177 - PGA1_c07230 0.88 +0.7 744,184 - PGA1_c07230 0.89 +0.5 744,186 + PGA1_c07230 0.89 +0.2 744,194 - -0.6 744,310 - -0.8 744,352 + +0.6 744,376 - +0.6 744,442 - PGA1_c07240 0.15 +0.4 744,571 + PGA1_c07240 0.28 -0.8 744,627 - PGA1_c07240 0.34 +1.1 744,723 - PGA1_c07240 0.44 -0.3 744,733 + PGA1_c07240 0.45 -0.9 744,733 + PGA1_c07240 0.45 -0.7 744,740 + PGA1_c07240 0.45 -0.5 744,741 - PGA1_c07240 0.46 -1.7 744,789 + PGA1_c07240 0.50 -2.4 744,792 - PGA1_c07240 0.51 -1.5 744,792 - PGA1_c07240 0.51 -1.4 744,827 + PGA1_c07240 0.54 -1.5 744,853 - PGA1_c07240 0.57 -1.3 744,862 + PGA1_c07240 0.58 +0.2 744,870 - PGA1_c07240 0.59 +1.5 744,889 - PGA1_c07240 0.60 +1.7 744,944 - PGA1_c07240 0.66 -3.5 744,969 + PGA1_c07240 0.68 -0.9 745,017 + PGA1_c07240 0.73 -0.4 745,049 - PGA1_c07240 0.77 -1.6 745,049 - PGA1_c07240 0.77 -0.5 745,051 + PGA1_c07240 0.77 +0.8 745,079 + PGA1_c07240 0.80 -0.1 745,089 + PGA1_c07240 0.81 -0.3 745,206 + -1.1 745,206 + +0.9 745,206 + -0.4 745,214 - -0.9 745,251 + -0.7 745,251 + -0.3 745,251 + -1.8 745,251 + -2.4 745,251 + +0.3 745,259 - +0.2 745,259 - -0.2 745,259 - -0.4 745,288 + -0.3 745,296 - -1.6 745,383 + -0.5 745,398 + -0.1 745,406 - +0.0 745,462 + -0.7 745,470 - PGA1_c07250 0.10 -1.2 745,501 + PGA1_c07250 0.12 -1.9 745,509 - PGA1_c07250 0.12 +0.3 745,514 + PGA1_c07250 0.12 +0.4 745,518 + PGA1_c07250 0.13 +0.8 745,526 - PGA1_c07250 0.13 -0.8 745,564 - PGA1_c07250 0.15 -1.4 745,573 - PGA1_c07250 0.16 -1.0 745,617 - PGA1_c07250 0.18 +0.9 745,634 + PGA1_c07250 0.19 -0.4 745,696 - PGA1_c07250 0.22 -0.3 745,740 + PGA1_c07250 0.24 -0.4 745,765 + PGA1_c07250 0.26 +1.7 745,767 - PGA1_c07250 0.26 +0.6 745,792 - PGA1_c07250 0.27 +1.7 745,861 - PGA1_c07250 0.31 +0.3 745,907 + PGA1_c07250 0.33 -1.1 745,917 + PGA1_c07250 0.34 +1.0 745,958 + PGA1_c07250 0.36 -0.5 745,966 - PGA1_c07250 0.37 -0.3 745,966 - PGA1_c07250 0.37 -0.3 746,003 + PGA1_c07250 0.39 -0.3 746,047 + PGA1_c07250 0.41 -0.4 746,072 - PGA1_c07250 0.42 +0.1 746,072 - PGA1_c07250 0.42 +0.4 746,083 + PGA1_c07250 0.43 +1.3 746,151 + PGA1_c07250 0.46 -0.9 746,189 + PGA1_c07250 0.48 +0.3
Or see this region's nucleotide sequence