Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0693 and Psest_0694 are separated by 180 nucleotides Psest_0694 and Psest_0695 are separated by 28 nucleotides Psest_0695 and Psest_0696 are separated by 34 nucleotides Psest_0696 and Psest_0697 are separated by 21 nucleotides Psest_0697 and Psest_0698 are separated by 103 nucleotides
Psest_0693: Psest_0693 - His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 757,393 to 759,555
_0693
Psest_0694: Psest_0694 - ribosomal protein S6, at 759,736 to 760,152
_0694
Psest_0695: Psest_0695 - ribosomal protein S18, at 760,181 to 760,411
_0695
Psest_0696: Psest_0696 - hypothetical protein, at 760,446 to 761,339
_0696
Psest_0697: Psest_0697 - ribosomal protein L9, at 761,361 to 761,807
_0697
Psest_0698: Psest_0698 - replicative DNA helicase, at 761,911 to 763,305
_0698
Position (kb) 760
761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 759.487 kb on + strand at 759.487 kb on + strand at 759.488 kb on - strand at 759.549 kb on + strand at 759.549 kb on + strand at 759.549 kb on + strand at 759.550 kb on - strand at 759.556 kb on + strand at 759.556 kb on + strand at 759.615 kb on + strand at 759.615 kb on + strand at 759.615 kb on + strand at 759.615 kb on + strand at 760.729 kb on + strand, within Psest_0696 at 760.729 kb on + strand, within Psest_0696 at 760.729 kb on + strand, within Psest_0696 at 760.730 kb on - strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.755 kb on + strand, within Psest_0696 at 760.756 kb on - strand, within Psest_0696 at 760.986 kb on + strand, within Psest_0696 at 760.987 kb on - strand, within Psest_0696 at 761.131 kb on + strand, within Psest_0696 at 761.205 kb on + strand, within Psest_0696 at 761.205 kb on + strand, within Psest_0696 at 761.205 kb on + strand, within Psest_0696 at 761.205 kb on + strand, within Psest_0696 at 761.206 kb on - strand, within Psest_0696 at 761.543 kb on + strand, within Psest_0697 at 761.740 kb on - strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.746 kb on + strand, within Psest_0697 at 761.747 kb on - strand, within Psest_0697 at 761.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 759,487 + +2.7 759,487 + +2.6 759,488 - +3.2 759,549 + +0.4 759,549 + -1.3 759,549 + -0.3 759,550 - +0.3 759,556 + -0.9 759,556 + +1.1 759,615 + +0.9 759,615 + +1.6 759,615 + +0.9 759,615 + +0.6 760,729 + Psest_0696 0.32 +1.6 760,729 + Psest_0696 0.32 +0.8 760,729 + Psest_0696 0.32 +1.8 760,730 - Psest_0696 0.32 -0.7 760,755 + Psest_0696 0.35 +2.2 760,755 + Psest_0696 0.35 -0.2 760,755 + Psest_0696 0.35 +1.2 760,755 + Psest_0696 0.35 +2.4 760,755 + Psest_0696 0.35 +1.7 760,755 + Psest_0696 0.35 +1.3 760,755 + Psest_0696 0.35 +1.5 760,755 + Psest_0696 0.35 +1.7 760,755 + Psest_0696 0.35 +0.0 760,755 + Psest_0696 0.35 -1.1 760,756 - Psest_0696 0.35 -2.0 760,986 + Psest_0696 0.60 +2.3 760,987 - Psest_0696 0.61 -0.6 761,131 + Psest_0696 0.77 +0.8 761,205 + Psest_0696 0.85 +1.7 761,205 + Psest_0696 0.85 -0.7 761,205 + Psest_0696 0.85 +2.0 761,205 + Psest_0696 0.85 +1.8 761,206 - Psest_0696 0.85 -0.8 761,543 + Psest_0697 0.41 -1.7 761,740 - Psest_0697 0.85 -1.0 761,746 + Psest_0697 0.86 -2.4 761,746 + Psest_0697 0.86 -1.6 761,746 + Psest_0697 0.86 -2.5 761,746 + Psest_0697 0.86 -1.0 761,746 + Psest_0697 0.86 +0.5 761,746 + Psest_0697 0.86 -0.9 761,747 - Psest_0697 0.86 -4.1 761,890 + +1.3
Or see this region's nucleotide sequence