Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06670

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06660 and PGA1_c06670 are separated by 136 nucleotidesPGA1_c06670 and PGA1_c06680 are separated by 229 nucleotidesPGA1_c06680 and PGA1_c06690 are separated by 33 nucleotides PGA1_c06660: PGA1_c06660 - glycosyl transferase-like protein, at 682,440 to 684,380 _c06660 PGA1_c06670: PGA1_c06670 - carbamoyl-phosphate synthase small chain, at 684,517 to 685,680 _c06670 PGA1_c06680: PGA1_c06680 - Uncharacterized conserved protein, at 685,910 to 686,383 _c06680 PGA1_c06690: PGA1_c06690 - prephenate deydrogenase-like protein, at 686,417 to 687,202 _c06690 Position (kb) 684 685 686Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 683.602 kb on + strand, within PGA1_c06660at 683.610 kb on - strand, within PGA1_c06660at 683.629 kb on + strand, within PGA1_c06660at 683.631 kb on + strand, within PGA1_c06660at 683.631 kb on + strand, within PGA1_c06660at 683.639 kb on - strand, within PGA1_c06660at 683.650 kb on + strand, within PGA1_c06660at 683.668 kb on - strand, within PGA1_c06660at 683.727 kb on - strand, within PGA1_c06660at 683.729 kb on - strand, within PGA1_c06660at 683.729 kb on - strand, within PGA1_c06660at 683.738 kb on + strand, within PGA1_c06660at 683.757 kb on + strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.822 kb on + strand, within PGA1_c06660at 683.846 kb on + strand, within PGA1_c06660at 683.848 kb on - strand, within PGA1_c06660at 683.849 kb on - strand, within PGA1_c06660at 683.849 kb on - strand, within PGA1_c06660at 683.939 kb on - strand, within PGA1_c06660at 683.999 kb on + strand, within PGA1_c06660at 684.007 kb on - strand, within PGA1_c06660at 684.085 kb on - strand, within PGA1_c06660at 684.232 kb on + strandat 684.328 kb on + strandat 684.328 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.369 kb on + strandat 684.371 kb on + strandat 684.377 kb on - strandat 684.388 kb on - strandat 684.399 kb on + strandat 684.399 kb on + strandat 684.407 kb on - strandat 684.445 kb on - strandat 684.455 kb on - strandat 684.494 kb on + strandat 684.499 kb on + strandat 684.507 kb on - strandat 684.507 kb on - strandat 684.523 kb on - strandat 684.572 kb on - strandat 684.590 kb on - strandat 684.681 kb on + strand, within PGA1_c06670at 684.699 kb on + strand, within PGA1_c06670at 684.700 kb on + strand, within PGA1_c06670at 684.707 kb on - strand, within PGA1_c06670at 684.739 kb on + strand, within PGA1_c06670at 684.739 kb on + strand, within PGA1_c06670at 684.987 kb on + strand, within PGA1_c06670at 685.093 kb on - strand, within PGA1_c06670at 685.124 kb on + strand, within PGA1_c06670at 685.374 kb on + strand, within PGA1_c06670at 685.440 kb on + strand, within PGA1_c06670at 685.510 kb on - strand, within PGA1_c06670at 685.512 kb on + strand, within PGA1_c06670at 685.520 kb on - strand, within PGA1_c06670at 685.525 kb on - strand, within PGA1_c06670at 685.525 kb on - strand, within PGA1_c06670at 685.532 kb on + strand, within PGA1_c06670at 685.581 kb on - strandat 685.725 kb on - strandat 685.725 kb on - strandat 685.737 kb on + strandat 685.738 kb on + strandat 685.738 kb on + strandat 685.809 kb on + strandat 685.888 kb on - strandat 685.903 kb on - strandat 686.423 kb on - strandat 686.441 kb on + strandat 686.441 kb on + strandat 686.502 kb on - strand, within PGA1_c06690at 686.544 kb on + strand, within PGA1_c06690at 686.547 kb on - strand, within PGA1_c06690at 686.564 kb on - strand, within PGA1_c06690at 686.583 kb on - strand, within PGA1_c06690at 686.607 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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683,602 + PGA1_c06660 0.60 -1.1
683,610 - PGA1_c06660 0.60 -0.4
683,629 + PGA1_c06660 0.61 -0.1
683,631 + PGA1_c06660 0.61 -0.1
683,631 + PGA1_c06660 0.61 +0.4
683,639 - PGA1_c06660 0.62 +1.1
683,650 + PGA1_c06660 0.62 -0.5
683,668 - PGA1_c06660 0.63 +1.9
683,727 - PGA1_c06660 0.66 +0.6
683,729 - PGA1_c06660 0.66 +0.4
683,729 - PGA1_c06660 0.66 +0.1
683,738 + PGA1_c06660 0.67 +0.5
683,757 + PGA1_c06660 0.68 +1.1
683,797 - PGA1_c06660 0.70 +1.2
683,797 - PGA1_c06660 0.70 +0.2
683,797 - PGA1_c06660 0.70 +1.6
683,822 + PGA1_c06660 0.71 -0.5
683,846 + PGA1_c06660 0.72 +0.4
683,848 - PGA1_c06660 0.73 +0.3
683,849 - PGA1_c06660 0.73 +0.0
683,849 - PGA1_c06660 0.73 -0.8
683,939 - PGA1_c06660 0.77 +0.1
683,999 + PGA1_c06660 0.80 +1.3
684,007 - PGA1_c06660 0.81 -0.3
684,085 - PGA1_c06660 0.85 -0.5
684,232 + +1.4
684,328 + -1.0
684,328 + +0.9
684,359 + +1.2
684,359 + -1.4
684,359 + -2.0
684,359 + -1.7
684,359 + -1.0
684,367 - +0.2
684,367 - +0.0
684,367 - -0.3
684,367 - +0.7
684,367 - -1.9
684,367 - -0.4
684,367 - +0.4
684,367 - -0.8
684,367 - +0.0
684,369 + -0.9
684,371 + +1.2
684,377 - +0.5
684,388 - +0.2
684,399 + -0.1
684,399 + -1.8
684,407 - +1.9
684,445 - -0.7
684,455 - -0.4
684,494 + -0.2
684,499 + -0.3
684,507 - -0.9
684,507 - -0.7
684,523 - -0.7
684,572 - +0.9
684,590 - -0.7
684,681 + PGA1_c06670 0.14 -1.3
684,699 + PGA1_c06670 0.16 -1.1
684,700 + PGA1_c06670 0.16 -2.6
684,707 - PGA1_c06670 0.16 -1.7
684,739 + PGA1_c06670 0.19 -1.9
684,739 + PGA1_c06670 0.19 +1.9
684,987 + PGA1_c06670 0.40 -0.7
685,093 - PGA1_c06670 0.49 -1.4
685,124 + PGA1_c06670 0.52 +0.3
685,374 + PGA1_c06670 0.74 +0.1
685,440 + PGA1_c06670 0.79 -1.4
685,510 - PGA1_c06670 0.85 -0.1
685,512 + PGA1_c06670 0.85 -0.1
685,520 - PGA1_c06670 0.86 -0.5
685,525 - PGA1_c06670 0.87 -1.4
685,525 - PGA1_c06670 0.87 -0.9
685,532 + PGA1_c06670 0.87 -1.4
685,581 - -1.1
685,725 - -1.7
685,725 - -0.8
685,737 + -0.6
685,738 + +1.2
685,738 + +1.5
685,809 + +0.2
685,888 - -1.0
685,903 - +1.2
686,423 - +2.3
686,441 + +1.2
686,441 + +1.3
686,502 - PGA1_c06690 0.11 +1.9
686,544 + PGA1_c06690 0.16 -0.4
686,547 - PGA1_c06690 0.17 -0.7
686,564 - PGA1_c06690 0.19 -0.4
686,583 - PGA1_c06690 0.21 -1.4
686,607 - PGA1_c06690 0.24 +1.9
686,677 - PGA1_c06690 0.33 -0.7
686,677 - PGA1_c06690 0.33 -2.8

Or see this region's nucleotide sequence